Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10170 Brassica napus HOM05D038712 ORTHO05D016697 1.8e-119 432.6 216 100.0
BcaC06g35873 Brassica carinata HOM05D000300 ORTHO05D016697 4.8e-88 328.2 169 96.4
BolC7t41466H Brassica oleracea HOM05D000300 ORTHO05D016697 2.4e-63 246.1 168 78.6
BcaC04g23562 Brassica carinata HOM05D014735 ORTHO05D016697 1.6e-59 233.4 116 98.3
BolC3t16746H Brassica oleracea HOM05D000300 ORTHO05D013472 2.1e-59 233.0 251 56.6
C03p44850 Brassica napus HOM05D000300 ORTHO05D013472 3.6e-59 232.3 251 56.6
Carub.0003s1068 Capsella rubella HOM05D000300 ORTHO05D013472 1.9e-44 183.3 260 45.4
BcaC01g04127 Brassica carinata HOM05D000300 ORTHO05D013472 9.6e-44 181.0 220 53.6
BcaC06g35874 Brassica carinata HOM05D000300 ORTHO05D016697 1.4e-42 177.2 93 95.7
BcaB04g18636 Brassica carinata HOM05D000300 ORTHO05D013472 4.4e-41 172.2 254 42.5
AT3G11380 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 1.7e-40 170.2 255 45.1
BcaC01g04126 Brassica carinata HOM05D000300 ORTHO05D013472 4.2e-39 165.6 255 41.6
C03p44860 Brassica napus HOM05D000300 ORTHO05D013472 4.2e-39 165.6 255 41.6
AL3G22860 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 7.1e-39 164.9 254 45.3
A03p37020 Brassica napus HOM05D000300 ORTHO05D013472 7.1e-39 164.9 255 41.6
BraA03t12864Z Brassica rapa HOM05D000300 ORTHO05D013472 7.1e-39 164.9 255 41.6
CARHR100860 Cardamine hirsuta HOM05D000300 ORTHO05D013472 6.0e-38 161.8 259 43.6
AL3G40150 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 3.3e-36 156.0 218 45.4
AL1G41540 Arabidopsis lyrata HOM05D000300 ORTHO05D017381 5.4e-31 138.7 215 39.5
C03p44820 Brassica napus HOM05D000300 ORTHO05D021402 1.6e-30 137.1 209 44.5
AT1G28020 Arabidopsis thaliana HOM05D000300 ORTHO05D017381 2.1e-30 136.7 215 40.0
BcaC01g04130 Brassica carinata HOM05D000300 ORTHO05D021402 3.3e-28 129.4 246 37.4
BolC3t16745H Brassica oleracea HOM05D000300 ORTHO05D000383 1.8e-26 123.6 166 45.2
Thhalv10027393m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 1.8e-26 123.6 215 36.7
CARHR027480 Cardamine hirsuta HOM05D000300 ORTHO05D000383 1.5e-25 120.6 217 36.4
BolC8t50380H Brassica oleracea HOM05D000300 ORTHO05D016697 2.0e-25 120.2 81 80.2
AL7G37910 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 2.6e-25 119.8 251 35.1
BolC1t01041H Brassica oleracea HOM05D000300 ORTHO05D000383 4.9e-24 115.5 214 35.5
Thhalv10009907m.g Eutrema salsugineum HOM05D000300 ORTHO05D017381 1.4e-23 114.0 198 39.4
A01p09220 Brassica napus HOM05D000300 ORTHO05D000383 2.4e-23 113.2 214 34.6
BraA01t00865Z Brassica rapa HOM05D000300 ORTHO05D000383 2.4e-23 113.2 214 34.6
C01p10800 Brassica napus HOM05D000300 ORTHO05D000383 5.5e-23 112.1 214 34.6
BcaB04g18627 Brassica carinata HOM05D000300 ORTHO05D013472 1.3e-21 107.5 120 50.0
BraA09t39326Z Brassica rapa HOM05D000300 ORTHO05D017381 9.6e-20 101.3 202 34.2
CARHR027450 Cardamine hirsuta HOM05D000300 ORTHO05D013482 1.6e-19 100.5 212 32.5
BcaB04g18632 Brassica carinata HOM05D000300 ORTHO05D016697 2.1e-19 100.1 130 47.7
BcaC05g26617 Brassica carinata HOM05D000300 ORTHO05D017381 2.8e-19 99.8 202 34.2
C05p26670 Brassica napus HOM05D000300 ORTHO05D017381 2.8e-19 99.8 202 34.2
BcaB07g30898 Brassica carinata HOM05D000300 ORTHO05D012934 3.7e-19 99.4 169 36.7
BraA09t39325Z Brassica rapa HOM05D000300 ORTHO05D017381 3.7e-19 99.4 202 34.2
BcaC07g39603 Brassica carinata HOM05D000300 ORTHO05D016697 4.8e-19 99.0 66 80.3
Thhalv10001237m.g Eutrema salsugineum HOM05D000300 ORTHO05D015941 4.8e-19 99.0 169 36.1
BolC5t31390H Brassica oleracea HOM05D000300 ORTHO05D017381 8.1e-19 98.2 164 37.2
Thhalv10012206m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 1.1e-18 97.8 202 37.1
AT1G28000 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 1.8e-18 97.1 215 34.0
Carub.0001s2645 Capsella rubella HOM05D000300 ORTHO05D013482 1.8e-18 97.1 212 34.9
C05p26630 Brassica napus HOM05D000300 ORTHO05D013482 2.6e-17 93.2 214 32.2
BraA09t39330Z Brassica rapa HOM05D000300 ORTHO05D013482 3.4e-17 92.8 214 32.2
Thhalv10009763m.g Eutrema salsugineum HOM05D000300 ORTHO05D013482 4.5e-17 92.4 189 30.7
BcaB04g18629 Brassica carinata HOM05D014735 ORTHO05D015941 1.0e-16 91.3 131 45.8
A09p38150 Brassica napus HOM05D000300 ORTHO05D013482 1.3e-16 90.9 214 31.8
BolC5t31382H Brassica oleracea HOM05D000300 ORTHO05D013482 1.3e-16 90.9 214 32.2
AT1G43010 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 4.9e-16 89.0 252 30.2
BcaC06g36388 Brassica carinata HOM05D014735 ORTHO05D019949 3.5e-14 82.8 62 72.6
BolC7t40865H Brassica oleracea HOM05D014735 ORTHO05D019949 3.5e-14 82.8 62 72.6
AT3G11350 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 4.6e-14 82.4 222 32.0
CARHR035800 Cardamine hirsuta HOM05D000300 ORTHO05D015941 6.0e-14 82.0 142 35.9
AL1G54230 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 7.9e-14 81.6 166 32.5
BraA09t39331Z Brassica rapa HOM05D000300 ORTHO05D013482 7.9e-14 81.6 217 30.4
AL1G54220 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 1.8e-13 80.5 150 34.0
CARHR027470 Cardamine hirsuta HOM05D000300 ORTHO05D012934 1.8e-13 80.5 107 46.7
BcaC05g26618 Brassica carinata HOM05D000300 ORTHO05D012934 2.3e-13 80.1 108 47.2
Thhalv10027559m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 3.0e-13 79.7 132 40.2
A09p38180 Brassica napus HOM05D000300 ORTHO05D013482 3.9e-13 79.3 187 30.5
BcaNung01373 Brassica carinata HOM05D000300 ORTHO05D015941 5.1e-13 79.0 83 51.8
BcaC04g18808 Brassica carinata HOM05D000300 ORTHO05D016697 8.7e-13 78.2 53 79.2
BcaB04g18633 Brassica carinata HOM05D000300 ORTHO05D021402 3.3e-12 76.3 58 70.7
Thhalv10001972m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 5.7e-12 75.5 210 28.1
BcaC05g26797 Brassica carinata HOM05D000300 ORTHO05D017381 9.6e-12 74.7 97 46.4
Sp3g33960 Schrenkiella parvula HOM05D000300 ORTHO05D000383 3.7e-11 72.8 109 40.4
BraA09t36941Z Brassica rapa HOM05D000300 ORTHO05D000383 1.8e-10 70.5 210 27.1
C09p15340 Brassica napus HOM05D000300 ORTHO05D000383 2.4e-10 70.1 210 27.1
BolC9t54442H Brassica oleracea HOM05D000300 ORTHO05D000383 2.4e-10 70.1 210 27.6
GSVIVG01020533001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.4e-10 70.1 184 25.0
A09p45440 Brassica napus HOM05D038712 ORTHO05D098000 3.1e-10 69.7 41 75.6
Hund10803 Selenicereus undatus HOM05D000300 ORTHO05D000383 3.1e-10 69.7 192 28.1
A09p12950 Brassica napus HOM05D000300 ORTHO05D000383 5.3e-10 68.9 212 26.9
BcaC04g22782 Brassica carinata HOM05D000300 ORTHO05D000383 6.9e-10 68.6 121 37.2
QL05p040005 Quercus lobata HOM05D000300 ORTHO05D000383 1.5e-09 67.4 203 25.6
QL12p006379 Quercus lobata HOM05D000300 ORTHO05D000383 1.5e-09 67.4 203 25.6
BolC5t31381H Brassica oleracea HOM05D000300 ORTHO05D013482 2.0e-09 67.0 176 29.5
BcaB07g31583 Brassica carinata HOM05D000300 ORTHO05D000383 2.6e-09 66.6 129 32.6
AL1G41500 Arabidopsis lyrata HOM05D000300 ORTHO05D015941 3.4e-09 66.2 104 38.5
TWI63G0633 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 7.6e-09 65.1 176 26.7
Cc02_g13280 Coffea canephora HOM05D000300 ORTHO05D000383 1.7e-08 63.9 215 22.3
Dinv23647 Davidia involucrata HOM05D000300 ORTHO05D000383 2.9e-08 63.2 183 29.5
Carub.0001s0426 Capsella rubella HOM05D000300 ORTHO05D015941 3.8e-08 62.8 205 29.3
QL08p038536 Quercus lobata HOM05D000300 ORTHO05D000383 5.0e-08 62.4 211 21.8
Prupe.3G136900 Prunus persica HOM05D000300 ORTHO05D000383 6.5e-08 62.0 91 38.5
CSS0011290 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 8.5e-08 61.6 200 26.0
CSS0029904 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 8.5e-08 61.6 200 26.0
MD05G1313800 Malus domestica HOM05D000300 ORTHO05D000383 8.5e-08 61.6 200 24.0
TAR626G1910 Trochodendron aralioides HOM05D000300 ORTHO05D000383 1.9e-07 60.5 210 24.8
Cfa000434 Carpinus fangiana HOM05D000300 ORTHO05D000383 2.5e-07 60.1 246 22.4
Ciclev10015002m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.5e-07 60.1 182 25.3
arahy.Tifrunner.gnm1.ann1.KF0AV4 Arachis hypogaea HOM05D000300 ORTHO05D000383 3.2e-07 59.7 176 24.4
CSS0026918 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 3.2e-07 59.7 208 24.5
COL.COLO4_31487 Corchorus olitorius HOM05D000300 ORTHO05D000383 3.2e-07 59.7 225 20.4
Duzib268G1868 Durio zibethinus HOM05D000300 ORTHO05D000383 3.2e-07 59.7 112 32.1
Lj1A724G17 Lonicera japonica HOM05D000300 ORTHO05D000383 3.2e-07 59.7 85 42.4
Thecc.06G189100 Theobroma cacao HOM05D000300 ORTHO05D000383 3.2e-07 59.7 235 23.8
TAR627G1084 Trochodendron aralioides HOM05D000300 ORTHO05D000383 5.5e-07 58.9 205 22.9
BcaC05g26612 Brassica carinata HOM05D000300 ORTHO05D013482 7.2e-07 58.5 85 42.4
Oeu050844.1 Olea europaea HOM05D000300 ORTHO05D000383 7.2e-07 58.5 198 25.8
Oeu050847.1 Olea europaea HOM05D000300 ORTHO05D000383 7.2e-07 58.5 198 25.8
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 7.2e-07 58.5 216 23.1
Prupe.8G026200 Prunus persica HOM05D000300 ORTHO05D000383 9.3e-07 58.2 78 42.3
RcHm_v2.0_Chr6g0275941 Rosa chinensis HOM05D000300 ORTHO05D000383 9.3e-07 58.2 226 24.8
SalBow8G4674 Salvia bowleyana HOM05D000300 ORTHO05D000383 9.3e-07 58.2 107 33.6
Glyma.15G073300 Glycine max HOM05D000300 ORTHO05D000383 1.2e-06 57.8 203 23.2
Gohir.A10G025300 Gossypium hirsutum HOM05D000300 ORTHO05D000383 1.2e-06 57.8 225 21.3
Gorai.011G027300 Gossypium raimondii HOM05D000300 ORTHO05D000383 1.2e-06 57.8 225 21.3
Thecc.07G082300 Theobroma cacao HOM05D000300 ORTHO05D000383 1.2e-06 57.8 105 33.3
Ah.09g237280 Amaranthus hybridus HOM05D000300 ORTHO05D000383 1.6e-06 57.4 175 26.9
arahy.Tifrunner.gnm1.ann1.1V91HL Arachis hypogaea HOM05D000300 ORTHO05D000383 1.6e-06 57.4 176 23.9
Carub.0001s3674 Capsella rubella HOM05D000300 ORTHO05D012934 1.6e-06 57.4 151 28.5
C08p27600 Brassica napus HOM05D038712 ORTHO05D102586 2.1e-06 57.0 30 80.0
Dinv07553 Davidia involucrata HOM05D000300 ORTHO05D000383 2.1e-06 57.0 200 23.0
Rhsim06G0132300 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.7e-06 56.6 121 31.4
CsaV3_1G012210 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.6e-06 56.2 112 30.4
Gohir.D10G026000 Gossypium hirsutum HOM05D000300 ORTHO05D000383 3.6e-06 56.2 174 22.4
HanXRQChr12g0371821 Helianthus annuus HOM05D000300 ORTHO05D008589 4.6e-06 55.8 108 33.3
BcaB04g18628 Brassica carinata HOM05D000300 ORTHO05D021402 6.1e-06 55.5 135 31.1
CANSAT78G0733 Cannabis sativa HOM05D000300 ORTHO05D000383 7.9e-06 55.1 107 29.9
AUR62017000 Chenopodium quinoa HOM05D000300 ORTHO05D000383 7.9e-06 55.1 175 23.4
Prupe.8G241600 Prunus persica HOM05D000300 ORTHO05D000383 7.9e-06 55.1 156 27.6


User provided reference genes

Program Settings