Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 4.7e-163 577.8 292 100.0
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 1.1e-132 476.9 253 95.3
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 4.8e-131 471.5 253 94.1
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 5.3e-130 468.0 253 93.3
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 1.3e-128 463.4 253 92.5
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 1.1e-124 450.3 253 90.1
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 4.6e-118 428.3 256 86.3
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 3.0e-117 425.6 253 85.0
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 4.8e-115 418.3 255 83.1
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 1.8e-114 416.4 253 83.8
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 4.5e-113 411.8 256 82.4
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 1.1e-111 407.1 258 80.6
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 8.5e-104 380.9 264 76.5
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 3.4e-92 342.4 258 70.5
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 1.4e-82 310.5 285 58.9
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 1.0e-80 304.3 255 58.8
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 6.1e-78 295.0 249 63.1
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 8.0e-78 294.7 244 63.5
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 1.4e-77 293.9 255 59.2
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 6.4e-75 285.0 276 56.5
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 8.3e-75 284.6 250 62.4
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 4.1e-74 282.3 250 58.0
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 7.0e-74 281.6 250 61.2
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 7.0e-74 281.6 286 55.6
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 1.6e-73 280.4 244 61.5
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 2.7e-73 279.6 272 54.8
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 1.3e-72 277.3 276 55.8
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 2.3e-72 276.6 268 56.0
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 2.3e-72 276.6 276 54.3
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 6.6e-72 275.0 248 57.3
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 1.1e-71 274.2 279 54.1
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 1.9e-71 273.5 266 54.9
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 1.9e-71 273.5 248 58.9
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 2.5e-71 273.1 246 58.5
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 2.5e-71 273.1 249 57.8
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 3.3e-71 272.7 297 52.5
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 3.3e-71 272.7 245 58.0
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 3.3e-71 272.7 311 50.2
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 7.3e-71 271.6 251 55.8
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 7.3e-71 271.6 248 56.5
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 1.2e-70 270.8 235 58.3
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.6e-70 270.4 228 60.5
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.6e-70 270.4 214 63.6
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 2.1e-70 270.0 223 61.9
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 1.4e-69 267.3 245 57.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.0e-69 265.8 208 63.5
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 6.8e-69 265.0 228 59.6
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 1.2e-68 264.2 277 52.0
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 2.2e-67 260.0 226 60.2
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 2.9e-67 259.6 254 54.7
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 4.9e-67 258.8 257 53.7
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 4.9e-67 258.8 251 55.0
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.4e-66 256.5 195 64.1
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 5.4e-66 255.4 250 57.2
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 1.0e-64 251.1 249 53.0
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.0e-64 251.1 247 53.0
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.3e-64 250.0 220 60.0
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 3.0e-64 249.6 182 65.9
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 5.6e-63 245.4 181 63.5
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 1.6e-62 243.8 249 53.8
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 2.1e-62 243.4 248 51.2
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 3.6e-62 242.7 264 50.4
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 6.2e-62 241.9 250 51.2
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 8.1e-62 241.5 184 60.3
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 8.1e-62 241.5 217 58.5
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 4.0e-61 239.2 237 55.3
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.5e-60 237.3 214 59.3
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 9.8e-60 234.6 254 50.4
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 2.9e-59 233.0 228 53.5
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.7e-59 232.6 230 55.2
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 2.7e-57 226.5 242 50.0
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.0e-57 225.3 243 49.4
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 7.8e-57 224.9 243 49.4
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 1.3e-56 224.2 286 49.0
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.3e-56 224.2 243 49.4
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 1.7e-56 223.8 264 49.2
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 1.7e-56 223.8 257 49.4
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.0e-56 223.0 243 48.6
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 3.0e-56 223.0 220 55.9
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 3.9e-56 222.6 210 56.2
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 1.1e-55 221.1 233 54.9
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.9e-55 220.3 243 49.0
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 2.5e-55 219.9 226 56.2
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 1.5e-52 210.7 274 46.4
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 3.4e-52 209.5 243 49.4
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 4.4e-52 209.1 244 45.1
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 9.9e-52 208.0 210 53.3
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.2e-51 206.8 202 52.5
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 4.9e-51 205.7 197 53.8
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 1.9e-50 203.8 194 55.2
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.4e-50 203.4 216 50.0
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 1.6e-49 200.7 211 53.6
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 2.1e-49 200.3 178 58.4
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 2.1e-49 200.3 211 53.1
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 2.7e-49 199.9 190 48.9
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 7.8e-49 198.4 182 54.4
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 1.3e-48 197.6 191 53.9
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 2.3e-48 196.8 213 50.7
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 1.5e-47 194.1 178 56.7
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.5e-47 193.4 244 45.1
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 2.5e-47 193.4 179 55.3
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 4.3e-47 192.6 244 44.7
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 5.6e-47 192.2 143 62.9
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 5.6e-47 192.2 286 44.1
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 5.6e-47 192.2 222 47.7
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 9.6e-47 191.4 189 54.5
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.2e-46 191.0 211 49.3
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 1.2e-46 191.0 192 51.0
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 1.2e-46 191.0 196 52.0
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 1.2e-46 191.0 186 54.8
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 2.1e-46 190.3 188 53.2
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 2.1e-46 190.3 185 54.1
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.8e-46 189.9 185 53.5
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 3.6e-46 189.5 196 51.5
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 6.2e-46 188.7 272 44.5
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 8.1e-46 188.3 188 55.3
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 1.1e-45 188.0 202 52.5
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.1e-45 188.0 244 43.9
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 1.1e-45 188.0 209 46.9
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.1e-45 188.0 203 51.2
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 2.4e-45 186.8 207 51.2
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 2.4e-45 186.8 222 47.3
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 4.0e-45 186.0 222 47.3
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 1.2e-44 184.5 247 46.2
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 1.2e-44 184.5 239 46.4
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 4.4e-44 182.6 143 59.4
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 4.4e-44 182.6 222 45.9
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 9.9e-44 181.4 181 52.5
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 3.8e-43 179.5 221 45.2
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 1.4e-42 177.6 179 50.3
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 2.4e-42 176.8 206 47.1
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 3.2e-42 176.4 180 49.4
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 2.5e-39 166.8 264 40.2
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 5.6e-39 165.6 291 37.1
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 2.8e-38 163.3 245 40.8
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 4.8e-38 162.5 177 46.9
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 2.4e-37 160.2 251 41.0
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 2.0e-36 157.1 126 61.1
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 3.4e-36 156.4 250 38.8
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 3.4e-36 156.4 144 53.5
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 9.9e-36 154.8 265 38.9
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 3.8e-35 152.9 125 59.2
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 3.8e-35 152.9 251 39.8
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 4.9e-35 152.5 213 43.2
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 1.9e-34 150.6 170 45.3
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 4.2e-34 149.4 125 60.8
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 6.0e-33 145.6 172 47.1
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 7.4e-31 138.7 240 35.4
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 2.1e-30 137.1 290 33.8
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 3.1e-29 133.3 262 34.4
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 2.2e-27 127.1 223 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 1.3e-24 117.9 165 40.6
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 1.3e-24 117.9 158 38.6
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 3.9e-24 116.3 102 53.9
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-22 110.9 158 38.0
PSO339G0741 Papaver somniferum HOM05D004023 ORTHO05D004681 2.6e-20 103.6 156 35.9
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 4.5e-20 102.8 83 56.6
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 4.5e-20 102.8 156 37.8
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 4.5e-20 102.8 156 37.8
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.1e-18 98.2 245 33.9
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 4.2e-18 96.3 183 38.8
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 9.3e-18 95.1 158 35.4
Oeu013106.1 Olea europaea HOM05D004023 ORTHO05D004681 3.3e-15 86.7 90 48.9
arahy.Tifrunner.gnm1.ann1.NU1P8G Arachis hypogaea HOM05D004023 ORTHO05D004681 7.4e-15 85.5 235 29.4
Lalb_Chr12g0200121 Lupinus albus HOM05D004023 ORTHO05D004681 2.1e-14 84.0 98 48.0
PSO478G2869 Papaver somniferum HOM05D004023 ORTHO05D004681 1.2e-12 78.2 94 42.6
Glyma.08G144367 Glycine max HOM05D004023 ORTHO05D004681 5.0e-11 72.8 85 48.2
Lalb_Chr12g0200111 Lupinus albus HOM05D004023 ORTHO05D004681 1.9e-10 70.9 49 69.4
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 1.6e-06 57.8 180 31.1


User provided reference genes

Program Settings