Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 5.0e-87 324.3 154 100.0
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 5.0e-87 324.3 154 100.0
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 5.0e-87 324.3 154 100.0
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 1.4e-84 316.2 154 98.1
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 1.4e-84 316.2 154 98.1
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 3.0e-84 315.1 154 97.4
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 3.3e-83 311.6 155 97.4
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 2.2e-74 282.3 155 86.5
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 3.7e-74 281.6 154 87.7
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 3.1e-73 278.5 153 85.6
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 1.2e-72 276.6 161 85.7
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 2.1e-69 265.8 159 81.1
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.8e-68 262.7 148 83.8
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 2.0e-67 259.2 157 80.3
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 1.4e-65 253.1 157 77.1
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.2e-61 240.0 144 78.5
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 2.1e-61 239.2 148 73.6
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.8e-60 234.2 149 72.5
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 8.9e-60 233.8 154 72.1
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 1.2e-59 233.4 146 74.7
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 1.5e-59 233.0 155 72.3
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 2.0e-59 232.6 154 72.1
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 3.4e-59 231.9 154 70.8
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 4.4e-59 231.5 154 71.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 5.7e-59 231.1 153 71.2
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 5.7e-59 231.1 154 70.8
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 9.8e-59 230.3 154 70.8
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 1.3e-58 229.9 142 76.1
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.7e-58 229.6 146 74.0
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.1e-57 226.9 154 69.5
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 1.8e-57 226.1 146 71.9
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 2.4e-57 225.7 143 74.1
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 4.1e-57 224.9 145 71.7
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 5.4e-57 224.6 153 70.6
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 1.2e-56 223.4 146 72.6
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 4.6e-56 221.5 155 67.7
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 5.9e-56 221.1 150 67.3
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 1.3e-55 219.9 146 69.9
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 2.3e-55 219.2 148 69.6
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 5.0e-55 218.0 145 70.3
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 5.0e-55 218.0 145 71.0
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 6.6e-55 217.6 151 69.5
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.1e-54 216.9 146 71.2
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 1.1e-54 216.9 146 71.2
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.1e-54 216.9 151 71.5
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.9e-54 216.1 131 76.3
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 2.5e-54 215.7 149 69.1
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 2.5e-54 215.7 136 73.5
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.3e-54 215.3 158 64.6
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 3.3e-54 215.3 146 70.5
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 3.3e-54 215.3 152 68.4
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 9.5e-54 213.8 156 67.9
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 9.5e-54 213.8 146 70.5
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 1.2e-53 213.4 139 72.7
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 2.1e-53 212.6 146 69.9
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 2.8e-53 212.2 155 65.2
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 1.4e-52 209.9 151 68.9
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.4e-52 209.9 141 70.9
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 2.3e-52 209.1 146 69.9
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 3.1e-52 208.8 151 68.9
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 4.0e-52 208.4 143 69.9
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 6.8e-52 207.6 151 65.6
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 8.9e-52 207.2 155 67.1
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.2e-51 206.8 142 66.2
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.5e-51 206.5 143 67.8
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 1.5e-51 206.5 143 70.6
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 2.0e-51 206.1 151 64.2
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 3.4e-51 205.3 152 67.1
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 3.4e-51 205.3 150 64.0
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 1.7e-50 203.0 142 68.3
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 2.2e-50 202.6 138 66.7
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 3.7e-50 201.8 143 67.8
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 3.7e-50 201.8 145 64.1
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 1.1e-49 200.3 142 70.4
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.9e-49 199.5 134 69.4
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 7.0e-49 197.6 143 64.3
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 9.2e-49 197.2 142 69.7
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 9.2e-49 197.2 150 62.7
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 6.0e-48 194.5 139 66.2
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 3.0e-47 192.2 141 64.5
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 1.5e-46 189.9 138 67.4
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 5.6e-46 188.0 152 62.5
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 9.5e-46 187.2 139 69.8
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 4.7e-45 184.9 142 68.3
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 5.2e-44 181.4 132 61.4
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.2e-43 180.3 147 60.5
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.2e-43 180.3 147 60.5
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 3.4e-43 178.7 140 63.6
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 3.7e-42 175.3 137 62.0
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.1e-38 163.7 138 57.2
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 1.5e-38 163.3 134 56.0
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 2.5e-38 162.5 133 59.4
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 3.3e-38 162.2 107 70.1
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 1.2e-37 160.2 120 67.5
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.4e-36 156.8 158 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 2.6e-35 152.5 134 54.5
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 2.6e-35 152.5 134 55.2
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 2.6e-35 152.5 151 51.7
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 3.7e-34 148.7 134 53.7
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.9e-33 146.4 149 51.7
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 7.8e-32 141.0 109 64.2
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 2.3e-31 139.4 142 50.7
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 5.6e-30 134.8 94 69.1
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.8e-28 129.8 100 64.0
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 3.1e-28 129.0 97 66.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 6.8e-28 127.9 145 46.2
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 6.0e-24 114.8 137 45.3
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 1.3e-21 107.1 81 67.9
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 4.9e-18 95.1 103 49.5
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 6.4e-18 94.7 164 37.8
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 6.0e-16 88.2 73 58.9
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.3e-15 87.0 157 35.0
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.1e-12 75.9 102 43.1


User provided reference genes

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