Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 0.0e+00 1313.1 744 100.0
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 0.0e+00 1297.7 769 96.6
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 0.0e+00 1245.3 744 95.2
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 0.0e+00 1134.4 659 98.5
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 0.0e+00 1106.3 684 93.3
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 0.0e+00 1075.8 659 92.3
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 1.1e-293 1013.1 660 82.7
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 1.6e-292 1009.2 659 82.5
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 4.1e-288 994.6 659 81.0
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.9e-285 985.7 659 80.7
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 1.4e-272 943.0 659 78.0
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.6e-239 833.2 661 71.7
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 1.2e-215 753.8 663 65.3
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 1.0e-214 750.7 510 79.8
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 5.6e-168 595.5 674 52.2
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 1.5e-165 587.4 677 51.7
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 2.6e-165 586.6 670 53.1
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 1.1e-163 581.3 668 50.4
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 2.1e-162 577.0 672 50.3
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 6.0e-162 575.5 677 51.8
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 9.6e-160 568.2 674 49.6
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 4.8e-159 565.8 682 49.7
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 8.1e-159 565.1 682 49.9
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 4.0e-158 562.8 678 49.9
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 6.9e-158 562.0 670 53.1
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 6.9e-158 562.0 670 53.1
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.5e-157 560.8 673 53.8
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 4.4e-157 559.3 681 50.8
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 1.7e-156 557.4 669 49.6
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 2.9e-156 556.6 681 50.7
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 1.6e-154 550.8 667 49.9
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.1e-154 550.4 674 48.5
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 2.7e-154 550.1 671 49.5
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 6.0e-154 548.9 664 49.1
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 1.3e-153 547.7 676 48.4
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 1.7e-153 547.4 676 48.5
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.1e-152 544.7 683 49.0
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.3e-152 543.1 669 48.9
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 7.3e-152 542.0 669 49.2
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.3e-151 541.2 683 49.0
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 2.8e-151 540.0 685 48.0
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 9.0e-150 535.0 664 47.9
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.2e-149 534.6 681 49.6
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 5.8e-149 532.3 634 49.8
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 5.8e-149 532.3 705 46.1
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.2e-148 530.4 728 45.6
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 8.4e-148 528.5 673 48.7
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 2.4e-147 526.9 666 48.5
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.6e-146 522.7 701 48.5
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 6.0e-146 522.3 679 48.0
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 2.3e-145 520.4 694 47.0
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 6.7e-145 518.8 661 49.2
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 8.7e-145 518.5 667 46.3
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 3.3e-144 516.5 667 47.7
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 2.1e-143 513.8 676 47.3
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 8.1e-143 511.9 656 47.9
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 2.6e-141 506.9 685 46.7
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 5.8e-141 505.8 669 45.9
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.0e-140 505.0 672 47.2
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 3.8e-140 503.1 672 46.1
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 3.8e-140 503.1 669 46.5
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 3.2e-139 500.0 669 46.3
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 7.9e-138 495.4 671 46.6
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 3.0e-137 493.4 810 40.5
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 6.7e-137 492.3 669 45.4
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 1.5e-136 491.1 677 45.9
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 3.3e-136 490.0 658 48.0
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 3.4e-133 479.9 551 50.3
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 4.5e-133 479.6 671 43.7
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.5e-133 479.6 709 46.0
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 1.1e-131 474.9 669 46.2
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 4.6e-130 469.5 786 40.5
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.6e-127 461.1 625 46.6
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 3.7e-127 459.9 693 44.0
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 4.8e-127 459.5 623 46.7
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 2.9e-124 450.3 617 48.8
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 3.8e-124 449.9 697 44.0
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 3.6e-122 443.4 680 42.9
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 2.2e-119 434.1 668 41.8
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 3.1e-118 430.3 668 41.3
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 1.0e-116 425.2 535 46.5
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.3e-116 424.9 679 40.8
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 5.0e-116 422.9 472 51.7
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 2.5e-115 420.6 621 43.8
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 6.1e-114 416.0 478 51.0
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 7.9e-114 415.6 498 48.6
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 7.0e-102 375.9 450 50.9
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.7e-100 371.3 661 41.1
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 3.8e-100 370.2 688 37.5
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 1.9e-99 367.9 501 46.5
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 2.3e-97 360.9 701 36.8
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 3.0e-97 360.5 675 37.3
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 5.7e-96 356.3 726 35.0
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 4.5e-93 346.7 543 41.8
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 1.3e-92 345.1 692 36.3
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.3e-92 345.1 706 34.3
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 4.7e-90 336.7 513 42.3
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.0e-89 335.5 688 34.7
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 9.2e-86 322.4 667 35.1
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.7e-84 318.2 451 49.7
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.4e-78 298.5 438 43.6
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 5.6e-67 260.0 608 32.1
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 7.5e-64 249.6 216 61.6
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 3.7e-55 220.7 857 27.4
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 2.0e-48 198.4 216 51.4
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 3.4e-48 197.6 188 58.5
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 1.9e-46 191.8 353 41.6
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 7.1e-46 189.9 807 26.4
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 5.6e-43 180.3 779 27.3
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 1.3e-42 179.1 250 45.6
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.1e-41 176.0 153 61.4
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.5e-40 172.2 134 68.7
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.6e-40 171.4 308 42.2
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.3e-31 142.5 222 41.0
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.6e-29 135.6 165 46.7
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 2.2e-23 115.2 185 40.0
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 8.4e-23 113.2 101 60.4
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 3.2e-22 111.3 340 28.5
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 4.6e-21 107.5 78 70.5
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 7.4e-19 100.1 94 60.6
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 6.3e-18 97.1 91 61.5
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 9.0e-17 93.2 90 62.2
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.9e-11 75.5 56 67.9
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 2.4e-09 68.6 90 44.4
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 8.5e-07 60.1 46 63.0
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 4.2e-06 57.8 73 46.6


User provided reference genes

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