Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 3.3e-64 248.4 147 100.0
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 3.3e-56 221.9 147 93.9
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 1.3e-39 166.8 120 92.5
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 1.8e-30 136.3 93 97.8
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 4.5e-29 131.7 91 97.8
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 5.5e-27 124.8 91 90.1
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 5.5e-27 124.8 91 90.1
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 9.4e-27 124.0 91 90.1
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.2e-26 123.6 91 72.5
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 6.1e-26 121.3 92 72.8
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 8.0e-26 120.9 91 87.9
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.0e-25 120.6 91 76.9
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.0e-25 120.6 91 76.9
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.0e-25 120.6 91 76.9
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 2.3e-25 119.4 91 70.3
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 2.3e-25 119.4 91 70.3
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 4.4e-24 115.2 91 84.6
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 5.7e-24 114.8 91 69.2
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 4.2e-19 98.6 91 75.8
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.1e-18 96.3 91 58.2
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.8e-17 93.2 92 71.7
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 2.3e-17 92.8 91 74.7
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 2.3e-17 92.8 91 74.7
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.0e-17 92.4 91 74.7
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 5.2e-17 91.7 50 90.0
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 5.2e-17 91.7 91 60.4
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 6.8e-17 91.3 91 72.5
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 8.9e-17 90.9 92 75.0
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.7e-15 86.7 92 72.8
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 2.2e-15 86.3 92 73.9
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 4.9e-15 85.1 92 72.8
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.2e-13 80.5 93 54.8
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.6e-13 80.1 92 71.7
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 2.0e-13 79.7 93 53.8
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.0e-13 79.7 93 52.7
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 2.0e-13 79.7 93 52.7
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 2.7e-13 79.3 93 52.7
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 5.9e-13 78.2 93 51.6
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.0e-12 77.4 93 51.6
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.0e-12 77.4 93 51.6
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.3e-12 77.0 93 51.6
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.9e-12 75.9 93 51.6
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 2.9e-12 75.9 93 51.6
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 3.8e-12 75.5 93 49.5
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.5e-11 72.8 92 57.6
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 3.3e-11 72.4 93 51.6
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 3.3e-11 72.4 101 48.5
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 4.3e-11 72.0 92 50.0
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 7.3e-11 71.2 92 48.9
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 9.5e-11 70.9 91 46.2
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.2e-10 70.5 95 46.3
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 1.2e-10 70.5 92 57.6
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 1.6e-10 70.1 93 47.3
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.6e-10 70.1 91 45.1
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.8e-10 69.3 93 45.2
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 2.8e-10 69.3 91 44.0
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 3.6e-10 68.9 94 48.9
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 3.6e-10 68.9 91 49.5
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 4.7e-10 68.6 94 51.1
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 6.1e-10 68.2 92 54.3
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 8.0e-10 67.8 90 48.9
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 8.0e-10 67.8 90 48.9
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 8.0e-10 67.8 90 48.9
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.0e-09 67.4 90 47.8
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 1.4e-09 67.0 91 45.1
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.4e-09 67.0 92 47.8
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.8e-09 66.6 92 51.1
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.8e-09 66.6 91 46.2
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 2.3e-09 66.2 47 70.2
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 4.0e-09 65.5 96 47.9
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 4.0e-09 65.5 91 44.0
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 6.8e-09 64.7 91 45.1
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 6.8e-09 64.7 91 50.5
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 8.9e-09 64.3 92 46.7
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 8.9e-09 64.3 92 47.8
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.2e-08 63.9 102 44.1
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.5e-08 63.5 75 50.7
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.5e-08 63.5 91 47.3
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 2.6e-08 62.8 115 41.7
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 2.6e-08 62.8 94 45.7
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 2.6e-08 62.8 91 46.2
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.6e-08 62.8 95 47.4
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 3.4e-08 62.4 92 41.3
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 3.4e-08 62.4 94 43.6
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.4e-08 62.4 92 50.0
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 4.4e-08 62.0 92 45.7
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 5.8e-08 61.6 90 44.4
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 7.5e-08 61.2 95 43.2
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 7.5e-08 61.2 51 62.7
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.5e-08 61.2 90 48.9
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 7.5e-08 61.2 94 45.7
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 9.8e-08 60.8 91 45.1
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 1.3e-07 60.5 93 40.9
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.7e-07 60.1 91 44.0
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.7e-07 60.1 95 43.2
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 1.7e-07 60.1 93 40.9
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.7e-07 60.1 90 44.4
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 2.2e-07 59.7 91 44.0
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.2e-07 59.7 95 42.1
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.2e-07 59.7 96 44.8
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.2e-07 59.7 90 43.3
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 2.9e-07 59.3 91 46.2
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.9e-07 59.3 95 42.1
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.9e-07 59.3 89 42.7
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 3.7e-07 58.9 92 44.6
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.7e-07 58.9 90 43.3
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.7e-07 58.9 92 42.4
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.7e-07 58.9 92 42.4
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 3.7e-07 58.9 90 44.4
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.7e-07 58.9 48 60.4
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 3.7e-07 58.9 88 45.5
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 3.7e-07 58.9 93 43.0
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 4.9e-07 58.5 96 42.7
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 4.9e-07 58.5 95 44.2
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 4.9e-07 58.5 47 61.7
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 6.4e-07 58.2 92 41.3
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.4e-07 58.2 96 43.8
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 6.4e-07 58.2 92 43.5
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.3e-07 57.8 42 61.9
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 8.3e-07 57.8 90 40.0
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 8.3e-07 57.8 89 43.8
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 8.3e-07 57.8 94 41.5
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 8.3e-07 57.8 92 40.2
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 8.3e-07 57.8 95 45.3
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 8.3e-07 57.8 93 62.4
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 1.1e-06 57.4 95 41.1
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.1e-06 57.4 91 47.3
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 1.1e-06 57.4 87 41.4
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 1.4e-06 57.0 96 40.6
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.4e-06 57.0 96 44.8
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.9e-06 56.6 40 60.0
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.4e-06 56.2 39 66.7
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.4e-06 56.2 84 38.1
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 2.4e-06 56.2 85 43.5
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 2.4e-06 56.2 95 42.1
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.4e-06 56.2 63 46.0
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 3.2e-06 55.8 91 44.0
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 4.1e-06 55.5 95 43.2
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 4.1e-06 55.5 100 42.0
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 4.1e-06 55.5 97 40.2
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.1e-06 55.5 96 43.8
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 4.1e-06 55.5 89 44.9
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 4.1e-06 55.5 48 62.5
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 5.4e-06 55.1 48 54.2
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 7.0e-06 54.7 91 41.8
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 7.0e-06 54.7 94 45.7
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 9.2e-06 54.3 94 41.5
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.2e-06 54.3 91 44.0
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 9.2e-06 54.3 99 43.4
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 9.2e-06 54.3 99 43.4


User provided reference genes

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