Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p08210 Brassica napus HOM05D001030 ORTHO05D024412 2.9e-30 134.4 61 100.0
C07p08240 Brassica napus HOM05D001030 ORTHO05D024412 2.9e-30 134.4 61 100.0
BolC7t41237H Brassica oleracea HOM05D001030 ORTHO05D024412 2.9e-30 134.4 61 100.0
BolC7t41240H Brassica oleracea HOM05D001030 ORTHO05D024412 2.9e-30 134.4 61 100.0
BcaC01g00094 Brassica carinata HOM05D001030 ORTHO05D024412 7.4e-26 119.8 70 81.4
BcaB03g12152 Brassica carinata HOM05D001030 ORTHO05D092014 1.8e-16 88.6 69 66.7
AT3G18850 Arabidopsis thaliana HOM05D001030 ORTHO05D003090 6.1e-12 73.6 36 86.1
BcaB04g20740 Brassica carinata HOM05D001030 ORTHO05D003090 6.1e-12 73.6 36 86.1
BcaC09g48856 Brassica carinata HOM05D001030 ORTHO05D003090 6.1e-12 73.6 36 86.1
C01p45170 Brassica napus HOM05D001030 ORTHO05D003090 6.1e-12 73.6 36 86.1
BolC1t04490H Brassica oleracea HOM05D001030 ORTHO05D003090 6.1e-12 73.6 36 86.1
A01p35590 Brassica napus HOM05D001030 ORTHO05D003090 1.4e-11 72.4 36 83.3
BraA01t03640Z Brassica rapa HOM05D001030 ORTHO05D003090 1.4e-11 72.4 36 83.3
Sp3g16950 Schrenkiella parvula HOM05D001030 ORTHO05D003090 1.4e-11 72.4 36 83.3
CARHR094300 Cardamine hirsuta HOM05D001030 ORTHO05D003090 2.3e-11 71.6 36 83.3
AL3G32240 Arabidopsis lyrata HOM05D001030 ORTHO05D003090 3.0e-11 71.2 36 80.6
Carub.0003s1869 Capsella rubella HOM05D001030 ORTHO05D003090 3.0e-11 71.2 36 80.6
Thhalv10020918m.g Eutrema salsugineum HOM05D001030 ORTHO05D003090 3.0e-11 71.2 36 80.6
BcaB06g25939 Brassica carinata HOM05D001030 ORTHO05D003090 6.7e-11 70.1 36 77.8
Aa31LG8G5690 Aethionema arabicum HOM05D001030 ORTHO05D003090 1.1e-10 69.3 36 77.8
BcaC05g28562 Brassica carinata HOM05D001030 ORTHO05D003090 2.0e-10 68.6 36 75.0
A05p30710 Brassica napus HOM05D001030 ORTHO05D003090 2.0e-10 68.6 36 75.0
C05p46590 Brassica napus HOM05D001030 ORTHO05D003090 2.0e-10 68.6 36 75.0
BolC5t33387H Brassica oleracea HOM05D001030 ORTHO05D003090 2.0e-10 68.6 36 75.0
BraA05t21912Z Brassica rapa HOM05D001030 ORTHO05D003090 2.0e-10 68.6 36 75.0
Hma1.2p1_0066F.1_g036740 Hydrangea macrophylla HOM05D001030 ORTHO05D003090 1.7e-09 65.5 36 66.7
Ca_20847_v3 Cicer arietinum L. HOM05D001030 ORTHO05D003090 3.7e-09 64.3 59 47.5
Dinv23555 Davidia involucrata HOM05D001030 ORTHO05D003090 3.7e-09 64.3 59 45.8
Prupe.8G103400 Prunus persica HOM05D001030 ORTHO05D003090 8.2e-09 63.2 36 63.9
Manes.15G148200 Manihot esculenta HOM05D001030 ORTHO05D003090 1.1e-08 62.8 36 63.9
Potri.009G112307 Populus trichocarpa HOM05D001030 ORTHO05D003090 1.1e-08 62.8 36 63.9
Potri.T125204 Populus trichocarpa HOM05D001030 ORTHO05D003090 1.1e-08 62.8 36 63.9
RcHm_v2.0_Chr6g0262951 Rosa chinensis HOM05D001030 ORTHO05D003090 1.1e-08 62.8 59 44.1
Sabra09G0085700 Salix brachista HOM05D001030 ORTHO05D003090 1.1e-08 62.8 36 63.9
TWI79G0970 Tripterygium wilfordii HOM05D001030 ORTHO05D003090 1.1e-08 62.8 59 44.1
MD10G1081700 Malus domestica HOM05D001030 ORTHO05D003090 1.4e-08 62.4 36 61.1
TAR628G0717 Trochodendron aralioides HOM05D001030 ORTHO05D003090 1.4e-08 62.4 36 61.1
Duzib132G0716 Durio zibethinus HOM05D001030 ORTHO05D003090 1.8e-08 62.0 36 63.9
THA.LOC104800068 Tarenaya hassleriana HOM05D001030 ORTHO05D003090 1.8e-08 62.0 36 61.1
Cpa.g.sc62.110 Carica papaya HOM05D001030 ORTHO05D003090 2.4e-08 61.6 36 63.9
Gohir.A13G048300 Gossypium hirsutum HOM05D001030 ORTHO05D003090 2.4e-08 61.6 36 63.9
Gohir.D13G046700 Gossypium hirsutum HOM05D001030 ORTHO05D003090 2.4e-08 61.6 36 63.9
Gorai.013G052400 Gossypium raimondii HOM05D001030 ORTHO05D003090 2.4e-08 61.6 36 63.9
QL11p042344 Quercus lobata HOM05D001030 ORTHO05D003090 3.1e-08 61.2 36 61.1
Ciclev10028764m.g Citrus clementina HOM05D001030 ORTHO05D003090 4.1e-08 60.8 36 61.1
PSO541G3837 Papaver somniferum HOM05D001030 ORTHO05D003090 5.3e-08 60.5 36 61.1
FAN15G0893 Fragaria x ananassa HOM05D001030 ORTHO05D003090 6.9e-08 60.1 36 58.3
FAN20G0111 Fragaria x ananassa HOM05D001030 ORTHO05D003090 6.9e-08 60.1 36 58.3
CiPaw.05G061000 Carya illinoinensis HOM05D001030 ORTHO05D003090 9.1e-08 59.7 36 58.3
Thecc.02G122000 Theobroma cacao HOM05D001030 ORTHO05D003090 9.1e-08 59.7 36 58.3
TPR.G28049 Trifolium pratense HOM05D001030 ORTHO05D003090 9.1e-08 59.7 36 58.3
TWI12G0261 Tripterygium wilfordii HOM05D001030 ORTHO05D003090 9.1e-08 59.7 59 45.8
Medtr4g069140 Medicago truncatula HOM05D001030 ORTHO05D003090 1.2e-07 59.3 36 58.3
TWI75G1722 Tripterygium wilfordii HOM05D001030 ORTHO05D003090 1.2e-07 59.3 36 55.6
COL.COLO4_32462 Corchorus olitorius HOM05D001030 ORTHO05D003090 1.5e-07 58.9 36 58.3
Psat7g185040 Pisum sativum HOM05D001030 ORTHO05D003090 1.5e-07 58.9 36 58.3
FvH4_2g08140 Fragaria vesca HOM05D001030 ORTHO05D003090 2.0e-07 58.5 36 58.3
FAN27G3413 Fragaria x ananassa HOM05D001030 ORTHO05D003090 2.0e-07 58.5 36 55.6
Nn5g29491 Nelumbo nucifera HOM05D001030 ORTHO05D003090 2.0e-07 58.5 36 55.6
vmacro19440 Vaccinium macrocarpon HOM05D001030 ORTHO05D003090 2.0e-07 58.5 36 63.9
Eucgr.G00474 Eucalyptus grandis HOM05D001030 ORTHO05D003090 2.6e-07 58.2 59 37.3
Glyma.17G248200 Glycine max HOM05D001030 ORTHO05D003090 2.6e-07 58.2 36 61.1
VMungo0647G0986 Vigna mungo HOM05D001030 ORTHO05D003090 2.6e-07 58.2 36 63.9
Actinidia17828 Actinidia chinensis HOM05D001030 ORTHO05D003090 3.4e-07 57.8 59 40.7
Lj5C200G17 Lonicera japonica HOM05D001030 ORTHO05D003090 3.4e-07 57.8 36 55.6
Os01g0782500 Oryza sativa ssp. japonica HOM05D001030 ORTHO05D003090 3.4e-07 57.8 36 58.3
SHI08216 Sapria himalayana HOM05D001030 ORTHO05D003090 3.4e-07 57.8 36 58.3
SGA_v2.0_scaffold14G07056 Striga asiatica HOM05D001030 ORTHO05D003090 3.4e-07 57.8 36 61.1
PGR042G0700 Punica granatum HOM05D001030 ORTHO05D003090 4.5e-07 57.4 36 58.3
Sc18g0004700 Simmondsia chinensis HOM05D001030 ORTHO05D003090 4.5e-07 57.4 35 54.3
arahy.Tifrunner.gnm1.ann1.3ZSL29 Arachis hypogaea HOM05D001030 ORTHO05D003090 5.9e-07 57.0 36 55.6
Manes.18G030100 Manihot esculenta HOM05D001030 ORTHO05D003090 5.9e-07 57.0 36 55.6
Psat6g032600 Pisum sativum HOM05D001030 ORTHO05D003090 5.9e-07 57.0 36 58.3
Potri.002G133100 Populus trichocarpa HOM05D001030 ORTHO05D003090 5.9e-07 57.0 36 55.6
CANSAT25G1023 Cannabis sativa HOM05D001030 ORTHO05D003090 7.7e-07 56.6 35 57.1
Cfa004976 Carpinus fangiana HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 55.6
FvH4_2g40310 Fragaria vesca HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 61.1
FAN15G1365 Fragaria x ananassa HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 61.1
FAN20G2173 Fragaria x ananassa HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 61.1
FAN27G0780 Fragaria x ananassa HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 61.1
Glyma.14G077500 Glycine max HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 58.3
Lj5g0013345 Lotus japonicus HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 58.3
Phvul.001G016800 Phaseolus vulgaris HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 61.1
RcHm_v2.0_Chr6g0300431 Rosa chinensis HOM05D001030 ORTHO05D003090 7.7e-07 56.6 36 61.1
Thecc.08G021900 Theobroma cacao HOM05D001030 ORTHO05D003090 7.7e-07 56.6 59 42.4
Haze_02418 Corylus avellana HOM05D001030 ORTHO05D003090 1.0e-06 56.2 36 55.6
Lj3g0020577 Lotus japonicus HOM05D001030 ORTHO05D003090 1.0e-06 56.2 36 52.8
Medtr1g021925 Medicago truncatula HOM05D001030 ORTHO05D003090 1.0e-06 56.2 36 55.6
Sabra14G0029700 Salix brachista HOM05D001030 ORTHO05D003090 1.0e-06 56.2 36 58.3
Solyc01g109370.3 Solanum lycopersicum HOM05D001030 ORTHO05D003090 1.0e-06 56.2 36 61.1
Sopen01g051560 Solanum pennellii HOM05D001030 ORTHO05D003090 1.0e-06 56.2 36 61.1
Duzib093G0850 Durio zibethinus HOM05D001030 ORTHO05D003090 1.3e-06 55.8 59 42.4
Migut.C00683 Erythranthe guttata HOM05D001030 ORTHO05D003090 1.3e-06 55.8 36 58.3
Gohir.A06G012100 Gossypium hirsutum HOM05D001030 ORTHO05D003090 1.3e-06 55.8 59 40.7
Gohir.D06G009500 Gossypium hirsutum HOM05D001030 ORTHO05D003090 1.3e-06 55.8 59 40.7
Gorai.010G012300 Gossypium raimondii HOM05D001030 ORTHO05D003090 1.3e-06 55.8 59 40.7
Os05g0502200 Oryza sativa ssp. japonica HOM05D001030 ORTHO05D003090 1.3e-06 55.8 36 58.3
PGSC0003DMG401025167 Solanum tuberosum HOM05D001030 ORTHO05D003090 1.3e-06 55.8 36 61.1
Zm00001eb292040 Zea mays HOM05D001030 ORTHO05D003090 1.3e-06 55.8 36 55.6
arahy.Tifrunner.gnm1.ann1.3XBT3V Arachis hypogaea HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 52.8
CSS0001423 Camellia sinensis var. sinensis HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 58.3
CAN.G322.109 Capsicum annuum HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 58.3
Cpa.g.sc64.45 Carica papaya HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 58.3
Ca_13335_v3 Cicer arietinum L. HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 58.3
Cc02_g17890 Coffea canephora HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 55.6
Lalb_Chr01g0002731 Lupinus albus HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 55.6
Potri.014G040600 Populus trichocarpa HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 55.6
Prupe.1G383800 Prunus persica HOM05D001030 ORTHO05D003090 1.7e-06 55.5 36 58.3
SalBow6G6676 Salvia bowleyana HOM05D001030 ORTHO05D003090 1.7e-06 55.5 59 39.0
MSTRG.5389 Avicennia marina HOM05D001030 ORTHO05D003090 2.2e-06 55.1 35 57.1
CDE06G2197 Ceratophyllum demersum HOM05D001030 ORTHO05D003090 2.2e-06 55.1 35 54.3
Duzib041G0229 Durio zibethinus HOM05D001030 ORTHO05D003090 2.2e-06 55.1 59 42.4
Nn1g05112 Nelumbo nucifera HOM05D001030 ORTHO05D003090 2.2e-06 55.1 59 37.3
Phvul.011G047600 Phaseolus vulgaris HOM05D001030 ORTHO05D003090 2.2e-06 55.1 36 52.8
Sabra02G0104000 Salix brachista HOM05D001030 ORTHO05D003090 2.2e-06 55.1 36 55.6
Hund29767 Selenicereus undatus HOM05D001030 ORTHO05D003090 2.2e-06 55.1 35 57.1
Hund29769 Selenicereus undatus HOM05D001030 ORTHO05D003090 2.2e-06 55.1 35 57.1
VMungo1127G1731 Vigna mungo HOM05D001030 ORTHO05D003090 2.2e-06 55.1 36 52.8
Atru.chr13.550 Acer truncatum HOM05D001030 ORTHO05D003090 2.9e-06 54.7 36 58.3
DCAR_022098 Daucus carota HOM05D001030 ORTHO05D003090 2.9e-06 54.7 36 55.6
Glyma.11G120600 Glycine max HOM05D001030 ORTHO05D003090 2.9e-06 54.7 36 52.8
Manes.05G163700 Manihot esculenta HOM05D001030 ORTHO05D003090 2.9e-06 54.7 36 52.8
TPR.G15732 Trifolium pratense HOM05D001030 ORTHO05D003090 2.9e-06 54.7 36 52.8
Zm00001eb151440 Zea mays HOM05D001030 ORTHO05D003090 2.9e-06 54.7 36 52.8
Actinidia15300 Actinidia chinensis HOM05D001030 ORTHO05D003090 3.8e-06 54.3 36 52.8
ATR0733G218 Amborella trichopoda HOM05D001030 ORTHO05D003090 3.8e-06 54.3 36 50.0
CDE04G1721 Ceratophyllum demersum HOM05D001030 ORTHO05D003090 3.8e-06 54.3 35 54.3
AUR62016702 Chenopodium quinoa HOM05D001030 ORTHO05D003090 3.8e-06 54.3 35 54.3
Oeu014324.1 Olea europaea HOM05D001030 ORTHO05D003090 3.8e-06 54.3 36 50.0
SMO367G0950 Selaginella moellendorffii HOM05D001030 ORTHO05D003090 3.8e-06 54.3 36 58.3
AUR62011359 Chenopodium quinoa HOM05D001030 ORTHO05D003090 5.0e-06 53.9 35 54.3
Ciclev10001493m.g Citrus clementina HOM05D001030 ORTHO05D003090 5.0e-06 53.9 36 52.8
Lalb_Chr24g0399071 Lupinus albus HOM05D001030 ORTHO05D003090 5.0e-06 53.9 36 58.3
Peaxi162Scf00684g00575 Petunia axillaris HOM05D001030 ORTHO05D003090 5.0e-06 53.9 36 52.8
Aqoxy6G01009 Aquilegia oxysepala HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 52.8
Dinv36041 Davidia involucrata HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 50.0
FAN24G3580 Fragaria x ananassa HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 55.6
Glyma.12G045700 Glycine max HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 50.0
HanXRQChr10g0307111 Helianthus annuus HOM05D001030 ORTHO05D003090 6.5e-06 53.5 59 39.0
Lsat_1_v5_gn_1_18540 Lactuca sativa HOM05D001030 ORTHO05D003090 6.5e-06 53.5 59 37.3
Lj4C45G2 Lonicera japonica HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 50.0
MBI16_g32006_MAGBIO Magnolia biondii HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 50.0
MD08G1036500 Malus domestica HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 55.6
Sed0015205 Sechium edule HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 52.8
SEGI_02484 Sequoiadendron giganteum HOM05D001030 ORTHO05D003090 6.5e-06 53.5 36 52.8
unitig_22.g6859 Utricularia gibba HOM05D001030 ORTHO05D003090 6.5e-06 53.5 59 39.0
GSVIVG01009645001 Vitis vinifera HOM05D001030 ORTHO05D003090 6.5e-06 53.5 59 42.4
MELO3C012571.2 Cucumis melo HOM05D001030 ORTHO05D003090 8.5e-06 53.1 36 52.8
Rhsim06G0036800 Rhododendron simsii HOM05D001030 ORTHO05D003090 8.5e-06 53.1 36 52.8


User provided reference genes

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