Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 0.0e+00 1289.6 729 100.0
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 0.0e+00 1271.9 729 99.0
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 0.0e+00 1216.1 729 95.9
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 0.0e+00 1124.8 740 88.8
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 0.0e+00 1110.1 739 88.1
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 9.9e-218 760.8 860 59.9
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.4e-200 703.7 845 59.2
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.1e-197 694.1 760 59.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.3e-197 692.2 775 57.8
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 2.4e-195 686.4 760 59.1
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 6.9e-187 658.3 813 53.8
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.9e-107 394.4 838 40.8
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.2e-103 381.7 823 42.0
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.0e-102 376.7 845 40.9
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 8.9e-102 375.6 834 40.3
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.2e-101 375.2 814 41.3
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.1e-98 364.4 858 39.4
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 2.7e-98 364.0 848 39.2
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 4.6e-98 363.2 861 39.5
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 5.1e-97 359.8 873 37.9
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 2.8e-95 354.0 858 37.8
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 4.9e-92 343.2 822 37.3
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.2e-90 338.6 917 36.9
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 4.0e-78 297.0 877 34.1
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.0e-57 229.2 798 32.2
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 6.9e-54 216.5 878 30.8
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 7.7e-53 213.0 896 30.6
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 7.2e-51 206.5 870 30.0
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 9.4e-51 206.1 854 30.0
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 9.7e-48 196.1 786 29.0
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 4.1e-46 190.7 840 28.5
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.8e-44 184.1 859 29.1
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 5.0e-44 183.7 864 28.2
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.9e-43 181.8 844 29.4
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 2.5e-43 181.4 902 30.0
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 2.5e-43 181.4 861 29.2
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 5.5e-43 180.3 854 28.9
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 9.7e-40 169.5 845 28.3
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 3.7e-39 167.5 860 28.8
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 6.3e-39 166.8 818 29.5
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 2.6e-37 161.4 910 26.3
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.6e-37 161.4 854 28.0
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 4.5e-37 160.6 864 27.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 7.7e-37 159.8 833 28.2
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.5e-36 156.8 861 29.5
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.1e-35 156.0 854 27.0
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.1e-35 156.0 879 27.6
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.5e-35 155.6 861 29.5
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.5e-35 154.8 849 26.6
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.5e-35 153.7 874 30.5
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 6.1e-34 150.2 798 28.8
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.8e-33 148.7 868 29.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.0e-33 147.9 862 29.2
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.2e-32 146.0 845 29.3
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.2e-32 146.0 827 26.5
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.5e-32 145.6 771 26.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.5e-32 145.6 818 27.8
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.6e-32 144.8 829 27.4
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 9.7e-32 142.9 819 26.6
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.7e-31 142.1 822 28.0
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 3.7e-31 141.0 873 27.7
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 3.1e-30 137.9 877 26.7
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 3.1e-30 137.9 852 27.2
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 5.3e-30 137.1 895 26.3
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 9.1e-30 136.3 863 27.6
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.0e-29 135.2 825 29.9
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.9e-29 133.7 764 27.2
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.0e-28 132.9 923 29.1
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.3e-28 132.5 898 27.7
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.7e-28 132.1 821 27.0
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.7e-28 132.1 948 25.5
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.0e-28 130.6 757 25.5
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 8.5e-28 129.8 785 27.5
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.1e-27 129.4 769 27.0
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.5e-27 128.3 869 26.6
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.5e-27 127.1 785 27.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 9.4e-27 126.3 831 28.8
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.2e-26 125.9 865 26.5
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.7e-26 124.8 831 26.8
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 2.7e-26 124.8 841 26.4
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 8.0e-26 123.2 214 39.3
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.0e-25 120.9 772 28.0
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 5.2e-25 120.6 878 26.9
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 8.8e-25 119.8 885 26.4
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.5e-24 119.0 842 25.7
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.6e-24 118.2 925 25.4
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.4e-24 117.9 790 27.0
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 3.4e-24 117.9 868 26.2
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 4.4e-24 117.5 844 25.6
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 6.3e-23 113.6 849 27.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.1e-22 112.8 793 25.7
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.4e-22 112.5 779 27.0
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.8e-22 112.1 778 27.9
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 3.1e-22 111.3 388 29.4
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 7.0e-22 110.2 783 27.5
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.1e-22 109.8 755 26.0
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 9.1e-22 109.8 896 27.7
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 9.1e-22 109.8 889 25.2
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.2e-21 109.4 878 25.9
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.6e-21 109.0 799 29.2
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 2.7e-21 108.2 858 25.3
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.0e-20 106.3 338 30.5
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.9e-19 102.1 825 26.3
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 2.5e-19 101.7 711 24.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.2e-19 101.3 800 25.1
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 5.5e-19 100.5 516 27.3
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 9.5e-19 99.8 820 26.2
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.2e-18 99.4 817 25.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 2.8e-18 98.2 776 24.2
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 2.8e-18 98.2 864 25.2
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 2.8e-18 98.2 860 25.2
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.8e-17 95.5 917 23.4
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.8e-17 95.5 425 26.4
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 5.2e-17 94.0 168 38.1
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 2.4e-14 85.1 907 24.4
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 2.0e-13 82.0 239 29.7
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 1.3e-12 79.3 356 31.2
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 3.8e-12 77.8 85 64.7
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 5.0e-12 77.4 848 23.7
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 9.5e-11 73.2 171 39.2
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.2e-10 72.8 808 25.1
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 6.1e-10 70.5 745 24.2
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 8.0e-10 70.1 549 25.5
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 5.2e-09 67.4 68 60.3
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.2e-08 66.2 169 33.7
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 2.0e-08 65.5 957 22.3
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 4.4e-08 64.3 208 34.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 5.7e-08 63.9 78 43.6
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 1.3e-07 62.8 159 34.0
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.7e-07 62.4 240 32.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.7e-07 61.2 89 40.4
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 4.9e-07 60.8 241 31.5
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 8.3e-07 60.1 159 34.0
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.1e-06 59.7 81 42.0
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 1.8e-06 58.9 151 33.1
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 1.8e-06 58.9 786 23.8
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 2.4e-06 58.5 72 48.6
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.4e-06 58.5 124 41.1
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 4.1e-06 57.8 152 32.9
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.4e-06 57.4 120 40.0
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 7.0e-06 57.0 184 34.8


User provided reference genes

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