Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.9e-168 595.9 338 100.0
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.9e-168 595.9 338 100.0
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.9e-168 595.9 338 100.0
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 6.3e-167 590.9 338 99.1
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.4e-166 589.7 338 99.1
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.2e-144 516.9 338 84.9
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 1.3e-143 513.5 338 84.3
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 4.8e-143 511.5 338 84.3
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 5.0e-140 501.5 339 84.4
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 2.5e-139 499.2 339 84.1
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 2.5e-139 499.2 370 78.9
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 8.8e-137 490.7 342 82.5
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 1.3e-135 486.9 339 80.8
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 2.2e-135 486.1 362 75.7
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 8.5e-132 474.2 383 73.9
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.5e-131 473.4 353 76.8
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 2.0e-128 463.0 354 69.5
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.4e-113 413.7 346 75.7
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 7.5e-112 407.9 339 73.2
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 7.3e-107 391.3 341 62.8
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 9.6e-91 337.8 344 54.4
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.6e-90 337.0 345 54.2
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 3.6e-90 335.9 344 54.1
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 4.7e-90 335.5 343 58.3
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 2.4e-89 333.2 346 55.8
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 8.9e-89 331.3 345 58.6
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 2.0e-88 330.1 345 56.8
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 7.6e-88 328.2 337 59.3
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.3e-87 327.4 347 58.5
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 3.8e-87 325.9 350 56.0
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 3.2e-86 322.8 328 59.5
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 5.4e-86 322.0 347 54.2
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 9.3e-86 321.2 342 55.8
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.2e-85 320.9 365 58.1
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 1.6e-85 320.5 340 60.3
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.5e-85 319.3 345 51.3
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 6.0e-85 318.5 350 52.9
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.0e-84 317.8 345 53.9
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 3.9e-84 315.8 343 56.6
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 8.7e-84 314.7 339 55.5
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.3e-83 312.4 337 57.9
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 8.1e-82 308.1 351 48.1
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.8e-81 307.0 345 47.0
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.2e-80 304.3 315 56.2
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.2e-80 304.3 347 57.1
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 1.5e-80 303.9 348 51.1
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 1.5e-80 303.9 350 56.0
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.0e-80 303.5 357 55.5
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 2.6e-80 303.1 342 54.4
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.5e-80 302.4 354 56.5
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 4.5e-80 302.4 348 54.0
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 4.5e-80 302.4 342 51.8
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 5.8e-80 302.0 354 56.5
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.3e-79 300.8 342 45.6
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 2.2e-79 300.1 341 56.3
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 6.4e-79 298.5 348 50.6
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 1.4e-78 297.4 347 49.6
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 1.9e-78 297.0 345 49.3
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 4.2e-78 295.8 342 49.7
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 4.2e-78 295.8 338 56.8
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 7.1e-78 295.0 343 44.9
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.2e-77 294.3 346 49.1
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 6.0e-77 292.0 347 49.3
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.0e-76 291.2 349 47.6
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.8e-76 290.4 347 46.1
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 2.3e-76 290.0 345 51.3
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 3.9e-76 289.3 343 51.6
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 5.1e-76 288.9 352 50.0
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 5.1e-76 288.9 342 52.6
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.1e-76 288.9 338 47.9
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 6.7e-76 288.5 345 50.1
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 2.5e-75 286.6 348 50.6
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 5.6e-75 285.4 339 50.7
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 9.6e-75 284.6 347 48.7
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.1e-74 283.5 341 48.7
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 4.8e-74 282.3 357 52.7
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 3.1e-73 279.6 386 50.0
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 4.0e-73 279.3 344 45.3
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 2.0e-72 276.9 337 51.9
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 3.4e-72 276.2 328 49.7
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.4e-72 276.2 343 50.4
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 6.4e-71 271.9 355 50.4
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 8.4e-71 271.6 347 45.5
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.6e-69 267.3 344 48.8
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 7.9e-69 265.0 333 48.9
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.1e-67 261.2 342 51.2
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.5e-67 260.8 347 46.7
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 5.6e-67 258.8 372 48.9
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 7.4e-67 258.5 316 45.9
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 7.4e-67 258.5 348 46.6
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 2.1e-66 256.9 336 43.8
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 8.2e-66 255.0 287 50.9
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.4e-65 254.2 337 42.1
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 3.1e-65 253.1 336 44.6
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.1e-65 253.1 327 45.3
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.1e-65 253.1 337 41.8
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.5e-64 250.8 349 41.0
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.0e-64 250.4 337 41.8
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 1.0e-63 248.1 344 42.4
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 8.4e-63 245.0 345 49.0
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.6e-61 240.7 349 39.3
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.7e-61 240.0 337 41.5
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.1e-59 234.6 319 45.5
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 1.0e-55 221.5 334 42.2
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 2.2e-55 220.3 370 41.6
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.5e-55 218.8 277 52.0
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 5.1e-52 209.1 324 38.6
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 1.9e-51 207.2 335 39.1
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.2e-50 203.8 346 42.8
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 2.2e-47 193.7 337 35.6
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 2.3e-44 183.7 392 35.2
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 7.4e-43 178.7 323 38.4
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.2e-39 167.2 253 38.3
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 3.8e-39 166.4 132 58.3
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 4.7e-37 159.5 173 48.0
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 6.7e-36 155.6 126 57.9
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 8.8e-36 155.2 116 63.8
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 7.7e-32 142.1 174 48.9
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 9.7e-27 125.2 148 39.9
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 8.5e-23 112.1 317 34.7
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 7.2e-22 109.0 107 48.6
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.7e-21 106.3 102 49.0
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 4.7e-21 106.3 318 29.9
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.0e-20 105.1 318 28.9
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.0e-19 100.9 158 41.1
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 3.4e-19 100.1 148 37.8
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.2e-16 91.7 352 26.1
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 9.8e-11 72.0 63 50.8
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 1.1e-09 68.6 56 53.6
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 8.6e-07 58.9 84 40.5
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 1.9e-06 57.8 91 39.6
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 2.5e-06 57.4 94 37.2
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 5.6e-06 56.2 110 35.5


User provided reference genes

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