Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 1.1e-176 623.2 320 100.0
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 7.0e-176 620.5 320 99.7
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 1.6e-151 539.7 338 84.6
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 2.1e-143 512.7 338 80.2
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 6.8e-139 497.7 338 78.1
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 7.4e-77 291.6 362 54.7
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 1.9e-72 276.9 341 51.6
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 8.0e-71 271.6 339 52.2
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 5.2e-70 268.9 345 53.3
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 7.5e-69 265.0 341 53.1
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 2.7e-63 246.5 368 48.6
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.4e-59 234.2 363 47.4
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 9.1e-59 231.5 371 46.4
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 1.0e-57 228.0 371 44.7
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.4e-51 206.8 339 42.8
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.0e-38 162.9 357 35.6
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 9.8e-37 158.3 358 36.0
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 6.6e-33 145.6 371 32.9
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.5e-32 144.4 371 31.0
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 3.6e-31 139.8 377 31.6
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 2.2e-28 130.6 381 34.6
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 4.9e-28 129.4 360 34.2
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 2.4e-27 127.1 365 30.4
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 5.4e-27 125.9 371 32.9
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 9.2e-27 125.2 351 36.2
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 2.7e-26 123.6 366 34.7
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 1.3e-25 121.3 365 31.5
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 1.3e-25 121.3 370 30.5
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 6.6e-25 119.0 384 31.0
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 1.5e-24 117.9 368 32.6
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 6.2e-23 112.5 387 30.5
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 8.1e-23 112.1 341 31.4
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 1.4e-22 111.3 288 35.4
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 1.8e-22 110.9 354 32.2
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 2.4e-22 110.5 397 31.0
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.2e-22 109.4 364 32.4
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.8e-22 109.0 364 31.3
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.2e-19 100.1 357 31.4
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.8e-18 95.5 366 29.8
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.0e-17 95.1 371 33.2
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.3e-17 94.0 352 28.7
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 4.0e-14 83.2 345 29.6
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 5.2e-14 82.8 371 28.8
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.2e-13 81.6 362 28.5
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.6e-13 80.5 360 29.7
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.6e-13 80.5 344 29.4
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 2.2e-12 77.4 342 27.5
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.4e-12 75.9 131 38.2
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 6.4e-12 75.9 362 28.2
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.4e-11 73.9 346 28.0
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 4.2e-11 73.2 359 28.4
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.2e-11 73.2 131 37.4
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 4.2e-11 73.2 346 27.7
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 5.4e-11 72.8 391 24.6
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.6e-10 71.2 344 26.5
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.7e-10 70.5 95 40.0
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.3e-09 68.2 362 26.0
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.3e-09 68.2 343 25.1
BolC9t54253H Brassica oleracea HOM05D004095 ORTHO05D003197 4.3e-08 63.2 41 73.2
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 7.3e-08 62.4 157 33.8
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 9.6e-08 62.0 351 27.4
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 9.6e-08 62.0 155 32.3
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 9.6e-08 62.0 98 38.8
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 9.6e-08 62.0 341 29.0
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.3e-07 61.6 387 25.6
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 1.6e-07 61.2 120 35.0
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.8e-07 60.5 260 29.6
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.6e-07 60.1 357 26.1
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.8e-07 59.7 348 26.1
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 8.1e-07 58.9 79 41.8
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 8.1e-07 58.9 340 26.5
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.1e-06 58.5 76 38.2
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.8e-06 57.8 290 27.2
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.8e-06 57.8 328 25.9
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.8e-06 57.8 75 38.7
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.4e-06 57.4 157 31.8
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.4e-06 57.4 156 32.7
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.0e-06 56.6 78 38.5
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.0e-06 56.6 78 38.5
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.3e-06 56.2 218 25.2
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 5.3e-06 56.2 356 25.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 9.0e-06 55.5 89 34.8
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 9.0e-06 55.5 160 31.2


User provided reference genes

Program Settings