Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36349 Brassica carinata HOM05D007514 ORTHO05D009469 4.9e-88 327.8 168 100.0
C07p05010 Brassica napus HOM05D007514 ORTHO05D009469 4.9e-88 327.8 168 100.0
BolC7t40902H Brassica oleracea HOM05D007514 ORTHO05D009469 4.9e-88 327.8 168 100.0
A07p02710 Brassica napus HOM05D007514 ORTHO05D009469 9.3e-87 323.6 168 98.8
BraA07t28071Z Brassica rapa HOM05D007514 ORTHO05D009469 9.3e-87 323.6 168 98.8
BcaB03g16581 Brassica carinata HOM05D007514 ORTHO05D009469 9.6e-84 313.5 168 95.8
Sp3g31390 Schrenkiella parvula HOM05D007514 ORTHO05D009469 7.6e-73 277.3 172 85.5
Thhalv10022884m.g Eutrema salsugineum HOM05D007514 ORTHO05D009469 3.9e-69 265.0 172 83.1
Carub.0003s3210 Capsella rubella HOM05D007514 ORTHO05D009469 2.1e-67 259.2 168 82.1
CARHR108460 Cardamine hirsuta HOM05D007514 ORTHO05D009469 2.4e-66 255.8 168 80.4
AL3G51000 Arabidopsis lyrata HOM05D007514 ORTHO05D009469 5.9e-65 251.1 170 81.8
AT2G17972 Arabidopsis thaliana HOM05D007514 ORTHO05D009469 1.9e-63 246.1 170 80.0
Aa31LG8G15140 Aethionema arabicum HOM05D007514 ORTHO05D009469 2.5e-55 219.2 176 69.9
THA.LOC104819752 Tarenaya hassleriana HOM05D007514 ORTHO05D009469 6.9e-50 201.1 180 62.2
TWI09G1362 Tripterygium wilfordii HOM05D007514 ORTHO05D009469 4.8e-35 151.8 170 51.8
Manes.02G103801 Manihot esculenta HOM05D007514 ORTHO05D009469 8.2e-35 151.0 172 53.5
Cpa.g.sc6.242 Carica papaya HOM05D007514 ORTHO05D009469 1.1e-34 150.6 170 53.5
Potri.005G115000 Populus trichocarpa HOM05D007514 ORTHO05D009469 2.4e-34 149.4 141 60.3
Ah.01g021120 Amaranthus hybridus HOM05D007514 ORTHO05D009469 9.1e-34 147.5 128 60.9
Hma1.2p1_0743F.1_g211610 Hydrangea macrophylla HOM05D007514 ORTHO05D009469 1.6e-33 146.7 103 69.9
Thecc.01G019700 Theobroma cacao HOM05D007514 ORTHO05D009469 2.0e-33 146.4 188 50.0
Sc16g0002120 Simmondsia chinensis HOM05D007514 ORTHO05D009469 2.7e-33 146.0 105 67.6
Sabra05G0094100 Salix brachista HOM05D007514 ORTHO05D009469 4.5e-33 145.2 109 68.8
Gohir.A02G170200 Gossypium hirsutum HOM05D007514 ORTHO05D009469 2.9e-32 142.5 108 68.5
Aqoxy5G01772 Aquilegia oxysepala HOM05D007514 ORTHO05D009469 3.8e-32 142.1 127 61.4
Lsat_1_v5_gn_3_74241 Lactuca sativa HOM05D007514 ORTHO05D009469 5.0e-32 141.7 106 67.9
Migut.L00252 Erythranthe guttata HOM05D007514 ORTHO05D009469 8.5e-32 141.0 104 70.2
Migut.L00394 Erythranthe guttata HOM05D007514 ORTHO05D009469 8.5e-32 141.0 104 70.2
Gorai.003G010100 Gossypium raimondii HOM05D007514 ORTHO05D009469 1.5e-31 140.2 108 67.6
Prupe.7G167500 Prunus persica HOM05D007514 ORTHO05D009469 2.5e-31 139.4 186 48.9
AUR62011597 Chenopodium quinoa HOM05D007514 ORTHO05D009469 3.2e-31 139.0 129 58.1
unitig_26.g10012 Utricularia gibba HOM05D007514 ORTHO05D009469 4.2e-31 138.7 100 69.0
Gohir.D03G009800 Gossypium hirsutum HOM05D007514 ORTHO05D009469 7.2e-31 137.9 149 53.0
SGA_v2.0_scaffold234G43648 Striga asiatica HOM05D007514 ORTHO05D009469 7.2e-31 137.9 134 55.2
MSTRG.883 Avicennia marina HOM05D007514 ORTHO05D009469 9.4e-31 137.5 129 57.4
Oeu059507.1 Olea europaea HOM05D007514 ORTHO05D009469 3.6e-30 135.6 121 57.0
Duzib264G0291 Durio zibethinus HOM05D007514 ORTHO05D009469 4.7e-30 135.2 172 50.0
CSS0010041 Camellia sinensis var. sinensis HOM05D007514 ORTHO05D009469 8.0e-30 134.4 109 63.3
CSS0030936 Camellia sinensis var. sinensis HOM05D007514 ORTHO05D009469 8.0e-30 134.4 109 63.3
Cc07_g10640 Coffea canephora HOM05D007514 ORTHO05D009469 1.0e-29 134.0 121 58.7
DCAR_016611 Daucus carota HOM05D007514 ORTHO05D009469 2.3e-29 132.9 99 68.7
Nn6g32368 Nelumbo nucifera HOM05D007514 ORTHO05D009469 6.8e-29 131.3 105 62.9
COL.COLO4_21918 Corchorus olitorius HOM05D007514 ORTHO05D009469 8.8e-29 131.0 109 63.3
Ciclev10026620m.g Citrus clementina HOM05D007514 ORTHO05D009469 1.2e-28 130.6 172 48.8
MD02G1133200 Malus domestica HOM05D007514 ORTHO05D009469 1.5e-28 130.2 180 47.2
QL06p032616 Quercus lobata HOM05D007514 ORTHO05D009469 2.0e-28 129.8 106 61.3
PGSC0003DMG401003636 Solanum tuberosum HOM05D007514 ORTHO05D009469 2.6e-28 129.4 126 56.3
Rhsim08G0034000 Rhododendron simsii HOM05D007514 ORTHO05D009469 4.4e-28 128.6 102 64.7
VMungo0251G0111 Vigna mungo HOM05D007514 ORTHO05D009469 5.7e-28 128.3 123 56.9
PSO541G1849 Papaver somniferum HOM05D007514 ORTHO05D009469 9.8e-28 127.5 141 52.5
Phvul.003G262200 Phaseolus vulgaris HOM05D007514 ORTHO05D009469 1.7e-27 126.7 116 57.8
Dinv33625 Davidia involucrata HOM05D007514 ORTHO05D009469 2.2e-27 126.3 130 55.4
MBI05_g15346_MAGBIO Magnolia biondii HOM05D007514 ORTHO05D009469 2.2e-27 126.3 148 47.3
PSO675G8043 Papaver somniferum HOM05D007514 ORTHO05D009469 2.2e-27 126.3 138 52.9
PGR119G2084 Punica granatum HOM05D007514 ORTHO05D009469 2.8e-27 125.9 141 52.5
arahy.Tifrunner.gnm1.ann1.EYR4CZ Arachis hypogaea HOM05D007514 ORTHO05D009469 3.7e-27 125.6 147 49.7
TAR365G1204 Trochodendron aralioides HOM05D007514 ORTHO05D009469 3.7e-27 125.6 146 48.6
Ca_22373_v3 Cicer arietinum L. HOM05D007514 ORTHO05D009469 1.1e-26 124.0 181 45.9
TAR365G0263 Trochodendron aralioides HOM05D007514 ORTHO05D009469 1.1e-26 124.0 146 47.9
CANSAT01G2848 Cannabis sativa HOM05D007514 ORTHO05D009469 1.4e-26 123.6 93 67.7
FAN26G2491 Fragaria x ananassa HOM05D007514 ORTHO05D009469 3.1e-26 122.5 81 71.6
Glyma.16G128900 Glycine max HOM05D007514 ORTHO05D009469 3.1e-26 122.5 121 54.5
Lj2P467T19 Lonicera japonica HOM05D007514 ORTHO05D009469 3.1e-26 122.5 95 66.3
arahy.Tifrunner.gnm1.ann1.JXSY0Y Arachis hypogaea HOM05D007514 ORTHO05D009469 4.1e-26 122.1 75 73.3
MELO3C007896.2 Cucumis melo HOM05D007514 ORTHO05D009469 5.4e-26 121.7 94 63.8
FvH4_1g11940 Fragaria vesca HOM05D007514 ORTHO05D009469 5.4e-26 121.7 83 69.9
FAN19G0235 Fragaria x ananassa HOM05D007514 ORTHO05D009469 5.4e-26 121.7 83 69.9
Lalb_Chr05g0229901 Lupinus albus HOM05D007514 ORTHO05D009469 7.0e-26 121.3 92 63.0
ClCG01G020240 Citrullus lanatus HOM05D007514 ORTHO05D009469 1.2e-25 120.6 95 63.2
FAN23G2896 Fragaria x ananassa HOM05D007514 ORTHO05D009469 1.6e-25 120.2 81 70.4
EL10Ac9g21968 Beta vulgaris HOM05D007514 ORTHO05D009469 2.7e-25 119.4 101 56.4
CiPaw.07G058000 Carya illinoinensis HOM05D007514 ORTHO05D009469 2.7e-25 119.4 175 43.4
CsaV3_6G047030 Cucumis sativus L. HOM05D007514 ORTHO05D009469 3.5e-25 119.0 97 59.8
Glyma.02G048800 Glycine max HOM05D007514 ORTHO05D009469 3.5e-25 119.0 101 61.4
Nitab4.5_0006286g0070 Nicotiana tabacum HOM05D007514 ORTHO05D009469 5.9e-25 118.2 74 77.0
Peaxi162Scf00083g00065 Petunia axillaris HOM05D007514 ORTHO05D009469 7.7e-25 117.9 136 50.7
Haze_03771 Corylus avellana HOM05D007514 ORTHO05D009469 1.0e-24 117.5 85 64.7
Cfa006967 Carpinus fangiana HOM05D007514 ORTHO05D009469 1.3e-24 117.1 85 64.7
Nitab4.5_0001959g0010 Nicotiana tabacum HOM05D007514 ORTHO05D009469 1.3e-24 117.1 129 53.5
Psat4g099040 Pisum sativum HOM05D007514 ORTHO05D009469 1.3e-24 117.1 70 75.7
Atru.chr3.793 Acer truncatum HOM05D007514 ORTHO05D009469 1.7e-24 116.7 90 63.3
Sopen02g028770 Solanum pennellii HOM05D007514 ORTHO05D009469 1.7e-24 116.7 74 74.3
Lj4g0013490 Lotus japonicus HOM05D007514 ORTHO05D009469 2.2e-24 116.3 79 70.9
TPR.G30050 Trifolium pratense HOM05D007514 ORTHO05D009469 2.2e-24 116.3 111 55.9
Sed0026037 Sechium edule HOM05D007514 ORTHO05D009469 6.5e-24 114.8 106 55.7
Medtr8g075960 Medicago truncatula HOM05D007514 ORTHO05D009469 8.5e-24 114.4 91 61.5
Zm00001eb228020 Zea mays HOM05D007514 ORTHO05D009469 1.1e-23 114.0 74 67.6
Duzib147G0981 Durio zibethinus HOM05D007514 ORTHO05D009469 1.5e-23 113.6 100 59.0
Os06g0715200 Oryza sativa ssp. japonica HOM05D007514 ORTHO05D009469 3.2e-23 112.5 77 64.9
FAN28G1094 Fragaria x ananassa HOM05D007514 ORTHO05D009469 2.7e-22 109.4 153 45.8
HPP92_025365 Vanilla planifolia HOM05D007514 ORTHO05D009469 2.7e-22 109.4 118 50.8
SMO353G0320 Selaginella moellendorffii HOM05D007514 ORTHO05D009469 8.0e-22 107.8 105 52.4
arahy.Tifrunner.gnm1.ann1.KXHU4R Arachis hypogaea HOM05D007514 ORTHO05D009469 4.0e-21 105.5 136 49.3
Pp3c15_14110 Physcomitrium patens HOM05D007514 ORTHO05D009469 4.0e-21 105.5 120 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4071 Anthoceros agrestis HOM05D007514 ORTHO05D009469 8.8e-21 104.4 116 49.1
Mapoly0011s0103 Marchantia polymorpha HOM05D007514 ORTHO05D009469 1.3e-19 100.5 69 65.2
SEGI_16775 Sequoiadendron giganteum HOM05D007514 ORTHO05D009469 9.2e-18 94.4 83 56.6
CAN.G66.6 Capsicum annuum HOM05D007514 ORTHO05D009469 1.2e-17 94.0 73 64.4
Cre05.g245102 Chlamydomonas reinhardtii HOM05D007514 ORTHO05D009469 8.0e-14 81.3 54 63.0


User provided reference genes

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