Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1611.7 801 100.0
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 0.0e+00 1609.7 801 99.9
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1605.9 801 99.6
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1550.4 801 95.9
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 0.0e+00 1546.6 809 95.1
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 0.0e+00 1497.6 805 92.0
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 0.0e+00 1484.2 805 91.3
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 0.0e+00 1472.2 806 89.6
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 0.0e+00 1455.3 807 88.4
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 0.0e+00 1454.9 806 88.8
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 0.0e+00 1448.0 810 87.9
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1446.4 802 90.9
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 0.0e+00 1278.5 810 78.4
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 0.0e+00 1188.7 817 71.8
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 8.7e-300 1033.5 819 62.4
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 3.6e-298 1028.1 819 63.4
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.1e-297 1026.5 822 62.5
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 5.3e-297 1024.2 822 62.8
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 6.9e-297 1023.8 822 62.3
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 5.8e-296 1020.8 822 62.0
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.5e-291 1005.4 820 62.4
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 9.6e-291 1003.4 823 61.7
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 3.6e-290 1001.5 817 61.2
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.4e-289 999.6 823 61.2
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 4.9e-287 991.1 824 61.0
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.0e-284 981.9 819 60.7
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.1e-284 981.1 819 60.7
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 3.7e-282 974.9 821 58.8
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 3.1e-281 971.8 817 60.1
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 4.0e-281 971.5 820 59.3
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 5.8e-280 967.6 882 56.5
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.0e-279 966.8 818 59.7
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 2.5e-278 962.2 817 59.2
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.2e-277 959.9 818 58.4
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 3.9e-276 954.9 787 61.4
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 8.7e-276 953.7 819 59.3
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.3e-274 949.9 816 58.8
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.6e-274 949.5 813 57.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.8e-274 948.7 819 58.6
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 3.7e-274 948.3 816 59.6
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 6.3e-274 947.6 815 58.5
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 4.1e-273 944.9 820 58.2
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 9.0e-273 943.7 822 58.0
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.2e-272 943.3 820 58.0
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.0e-271 940.3 819 59.2
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 4.2e-270 934.9 818 58.6
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.0e-268 930.2 817 58.3
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 5.1e-268 927.9 823 56.0
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.5e-267 925.6 819 57.4
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 7.4e-267 924.1 819 57.8
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 3.7e-266 921.8 820 57.3
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 9.0e-265 917.1 847 57.3
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 4.5e-264 914.8 818 57.1
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.7e-263 912.9 821 56.8
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 6.5e-263 911.0 814 56.6
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 8.5e-263 910.6 821 57.0
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.9e-262 909.4 825 57.5
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 5.5e-262 907.9 820 55.9
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.4e-262 907.1 820 56.7
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 2.7e-261 905.6 816 55.4
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 2.7e-261 905.6 819 56.4
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 6.1e-261 904.4 810 55.4
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 2.5e-259 899.0 814 56.4
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 2.8e-258 895.6 816 56.9
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 2.8e-258 895.6 856 54.3
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.1e-257 893.6 822 56.0
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 1.8e-257 892.9 804 56.0
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.8e-257 892.9 815 55.8
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 6.9e-257 891.0 822 56.8
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.4e-256 888.6 822 56.0
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 3.4e-256 888.6 814 55.2
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.0e-255 887.1 814 55.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 2.2e-255 885.9 817 54.8
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.1e-254 883.6 818 56.5
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.5e-254 882.5 883 53.0
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 5.5e-254 881.3 819 54.8
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.6e-253 879.8 822 54.9
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.7e-253 879.0 811 54.9
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.4e-252 876.7 814 54.9
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 2.3e-252 875.9 819 56.7
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 6.7e-252 874.4 835 55.8
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 1.1e-251 873.6 819 55.4
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.5e-251 873.2 815 55.3
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 7.4e-251 870.9 819 56.4
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 4.2e-246 855.1 829 53.9
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.8e-244 849.7 840 56.3
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.7e-244 847.8 806 56.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.3e-241 838.2 806 56.5
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 3.2e-238 828.9 809 60.7
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 7.5e-235 817.8 814 52.5
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.4e-233 813.5 813 52.3
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 4.9e-226 788.5 826 51.3
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.1e-222 777.3 809 49.8
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 2.5e-222 776.2 588 65.8
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 7.3e-222 774.6 817 49.9
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.1e-221 773.1 812 50.9
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 6.1e-221 771.5 808 53.6
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 3.0e-220 769.2 811 48.3
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.6e-219 766.1 830 49.9
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.2e-217 759.2 627 58.7
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 4.0e-212 742.3 817 49.1
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 2.5e-206 723.0 733 53.2
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 5.4e-201 705.3 804 51.2
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.1e-198 697.6 562 61.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.5e-198 696.4 887 45.5
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 9.5e-198 694.5 666 55.9
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 4.0e-188 662.5 823 44.3
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 6.0e-184 648.7 807 48.9
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.7e-170 604.0 825 41.7
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 7.6e-163 578.6 464 62.9
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 9.7e-150 535.0 845 36.9
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.4e-140 504.6 849 36.7
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 4.7e-136 489.6 581 46.0
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.8e-135 487.6 830 37.2
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.4e-132 478.0 339 68.1
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.0e-130 469.5 479 51.4
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 4.8e-125 453.0 837 34.8
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.6e-110 404.1 406 55.2
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.0e-107 394.4 271 77.9
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.9e-106 390.6 270 77.4
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.3e-105 387.1 270 77.4
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 4.0e-95 353.6 682 32.6
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.9e-89 334.7 420 45.5
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.7e-66 258.5 742 29.6
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 8.1e-56 223.0 151 68.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 4.6e-51 207.2 844 24.8
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.4e-44 185.7 158 60.8
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.1e-43 181.8 197 45.7
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.3e-42 179.1 462 30.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 1.6e-40 172.2 195 47.7
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 9.0e-39 166.4 106 81.1
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.3e-37 162.5 106 79.2
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 9.7e-33 146.4 104 64.4
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 9.7e-25 119.8 135 45.9
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 2.0e-22 112.1 139 41.0
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.6e-22 111.7 63 90.5
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.1e-20 106.3 94 55.3
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.4e-15 88.6 79 57.0
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.2e-12 78.2 94 41.5
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 9.4e-12 76.6 96 52.1
BcaC09g48066 Brassica carinata HOM05D014782 ORTHO05D031875 1.2e-11 76.3 117 47.0
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-10 72.8 49 67.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.8e-10 72.4 49 67.3
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 8.8e-10 70.1 40 87.5
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 8.8e-10 70.1 40 87.5
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 3.3e-09 68.2 62 50.0
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 8.2e-08 63.5 94 41.5
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.4e-07 62.8 71 40.8
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.7e-06 58.5 40 67.5


User provided reference genes

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