Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-68 263.1 132 100.0
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 1.2e-68 263.1 132 100.0
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 4.2e-66 254.6 132 97.0
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 2.1e-62 242.3 132 91.7
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 6.9e-61 237.3 133 91.0
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 1.2e-60 236.5 132 90.2
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.0e-60 235.7 132 89.4
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.0e-60 235.7 142 85.9
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 5.8e-60 234.2 132 90.2
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 5.8e-60 234.2 133 91.0
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 9.9e-60 233.4 132 90.2
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 9.9e-60 233.4 132 89.4
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 2.2e-59 232.3 132 87.1
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 2.9e-59 231.9 133 88.7
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 4.9e-59 231.1 133 88.7
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 7.9e-57 223.8 112 99.1
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.3e-56 223.0 142 82.4
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 3.9e-56 221.5 133 86.5
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 6.7e-56 220.7 115 94.8
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 6.7e-56 220.7 132 85.6
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 9.6e-55 216.9 130 84.6
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 1.6e-54 216.1 133 85.0
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 4.8e-54 214.5 132 81.1
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.2e-52 209.9 132 83.3
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.5e-44 183.0 138 71.0
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 5.8e-44 181.0 134 70.1
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 1.3e-40 169.9 134 66.4
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.3e-40 169.1 146 64.4
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 3.9e-40 168.3 140 65.0
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 8.7e-40 167.2 134 67.2
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.5e-39 166.4 134 67.9
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 1.3e-38 163.3 136 66.9
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.6e-38 162.9 135 66.7
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.8e-38 161.4 143 64.3
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 4.8e-38 161.4 140 63.6
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 6.3e-38 161.0 139 64.7
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 6.3e-38 161.0 140 63.6
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.3e-38 161.0 143 64.3
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.8e-37 159.5 139 64.0
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 2.4e-37 159.1 141 61.7
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 5.3e-37 157.9 135 65.2
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 6.9e-37 157.5 115 72.2
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.5e-36 156.4 138 62.3
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.6e-36 155.6 134 64.2
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.3e-35 153.3 135 64.4
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 6.5e-35 151.0 137 63.5
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.1e-34 150.2 139 60.4
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.1e-34 150.2 136 61.8
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 4.2e-34 148.3 137 62.8
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 4.2e-34 148.3 124 66.9
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 7.2e-34 147.5 142 59.2
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 7.2e-34 147.5 145 57.2
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.2e-33 146.7 138 61.6
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 2.1e-33 146.0 146 57.5
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 2.1e-33 146.0 134 63.4
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.7e-33 145.6 143 58.0
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.6e-33 144.8 135 57.8
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 4.6e-33 144.8 120 66.7
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 4.6e-33 144.8 144 57.6
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.3e-32 143.3 147 56.5
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 1.8e-32 142.9 121 65.3
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.0e-32 142.1 137 60.6
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 5.1e-32 141.4 143 57.3
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 8.7e-32 140.6 139 60.4
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 8.7e-32 140.6 117 65.8
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.1e-31 140.2 119 64.7
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 1.1e-31 140.2 142 58.5
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.5e-31 139.8 134 61.2
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 5.7e-31 137.9 134 58.2
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 7.4e-31 137.5 139 57.6
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 9.7e-31 137.1 113 64.6
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 1.3e-30 136.7 127 57.5
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.3e-30 136.7 138 57.2
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.8e-30 134.8 133 56.4
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 8.2e-30 134.0 133 57.9
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 1.1e-29 133.7 137 54.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.4e-29 133.3 124 61.3
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.4e-29 132.5 119 62.2
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 5.3e-29 131.3 127 59.1
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 9.1e-29 130.6 132 52.3
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 9.1e-29 130.6 134 56.0
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.5e-28 129.8 149 52.3
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 2.0e-28 129.4 140 55.7
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 2.6e-28 129.0 143 51.7
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 7.7e-28 127.5 156 49.4
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.0e-27 127.1 165 50.3
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 1.0e-27 127.1 182 46.2
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 2.2e-27 125.9 153 50.3
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.9e-27 125.6 132 52.3
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.9e-27 125.6 115 60.9
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.8e-27 125.2 165 49.7
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.8e-27 125.2 165 49.7
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 3.8e-27 125.2 145 50.3
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 5.0e-27 124.8 182 45.1
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 6.5e-27 124.4 159 49.1
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 8.5e-27 124.0 135 51.1
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.4e-26 123.2 145 49.0
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 2.5e-26 122.5 143 51.7
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 3.2e-26 122.1 137 54.0
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.2e-26 121.7 113 58.4
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.2e-25 120.2 133 50.4
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.6e-25 119.8 131 52.7
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 6.1e-25 117.9 132 50.0
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.0e-24 117.1 142 49.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 1.0e-24 117.1 156 50.0
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.4e-24 116.7 128 51.6
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.0e-24 115.5 122 54.9
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 5.1e-24 114.8 142 48.6
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.1e-24 114.8 126 55.6
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 6.7e-24 114.4 112 55.4
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 8.8e-24 114.0 121 56.2
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.1e-23 113.6 149 47.7
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 1.1e-23 113.6 132 53.8
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.5e-23 113.2 136 50.7
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 2.0e-23 112.8 131 51.9
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 2.6e-23 112.5 160 46.2
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 2.6e-23 112.5 136 49.3
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 4.4e-23 111.7 122 50.0
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 4.4e-23 111.7 152 47.4
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.4e-23 111.7 132 48.5
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 7.4e-23 110.9 122 51.6
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 7.4e-23 110.9 117 53.0
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 9.7e-23 110.5 143 48.3
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.7e-22 109.8 121 53.7
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 2.2e-22 109.4 131 51.9
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 2.2e-22 109.4 138 49.3
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.8e-22 109.0 157 45.2
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 4.8e-22 108.2 118 50.8
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 6.3e-22 107.8 154 43.5
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.4e-21 106.7 131 47.3
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 4.1e-21 105.1 142 45.8
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 6.9e-21 104.4 133 46.6
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 6.9e-21 104.4 126 51.6
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.5e-20 103.2 111 52.3
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.4e-20 102.1 123 48.0
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 1.7e-19 99.8 129 48.1
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 1.7e-19 99.8 128 46.1
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.0e-19 98.2 149 42.3
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 3.2e-18 95.5 140 47.1
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 2.6e-15 85.9 90 55.6
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.7e-14 83.2 183 35.5
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 2.8e-14 82.4 113 44.2
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 4.8e-14 81.6 149 38.3
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 8.2e-14 80.9 174 36.2
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 2.4e-13 79.3 67 56.7
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 4.1e-13 78.6 88 50.0
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 5.3e-13 78.2 104 51.0
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 5.9e-12 74.7 101 41.6
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.0e-08 63.9 100 45.0
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 3.3e-07 58.9 88 46.6
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 1.7e-06 56.6 90 43.3
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 3.7e-06 55.5 93 43.0


User provided reference genes

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