Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 9.7e-223 777.3 416 100.0
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 2.2e-222 776.2 416 99.8
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 1.4e-216 756.9 409 99.5
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 4.0e-200 702.2 414 92.8
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 7.0e-197 691.4 410 92.9
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 2.0e-188 663.3 413 82.1
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 1.6e-153 547.4 415 77.3
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 4.8e-129 466.1 411 67.6
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 6.7e-123 445.7 420 63.8
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 3.3e-122 443.4 363 70.5
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 5.3e-120 436.0 318 72.3
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 2.6e-119 433.7 417 64.3
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 7.2e-109 399.1 416 60.6
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 1.0e-67 262.3 357 44.8
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.3e-62 245.4 341 45.7
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 2.5e-61 241.1 415 41.4
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 3.6e-60 237.3 351 42.5
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 1.5e-58 231.9 305 47.5
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 2.0e-58 231.5 305 46.9
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 4.9e-57 226.9 328 44.5
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 1.1e-56 225.7 349 37.8
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 1.0e-54 219.2 335 42.1
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 5.6e-53 213.4 341 42.8
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 7.3e-53 213.0 305 43.0
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 7.1e-48 196.4 332 40.7
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 1.2e-47 195.7 321 42.7
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 1.0e-46 192.6 333 41.7
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 8.6e-46 189.5 328 41.2
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 8.6e-46 189.5 341 40.8
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.1e-43 182.6 334 39.5
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 3.0e-38 164.5 335 36.4
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 3.9e-38 164.1 337 36.5
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 2.4e-35 154.8 357 35.9
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 3.1e-35 154.5 303 37.0
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.9e-32 145.2 334 35.0
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 5.4e-32 143.7 334 35.3
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 1.5e-26 125.6 310 31.3
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 8.4e-25 119.8 244 34.4
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.1e-24 119.4 289 35.3
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.6e-23 115.5 144 43.1
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 9.6e-21 106.3 239 38.5
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 2.7e-15 88.2 154 33.1
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.1e-12 78.6 243 24.7
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 6.2e-12 77.0 166 32.5
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 6.9e-11 73.6 243 24.3
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 1.2e-10 72.8 203 29.6
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 2.0e-10 72.0 229 25.3
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 4.5e-10 70.9 224 26.3
Nn8g41093 Nelumbo nucifera HOM05D008483 ORTHO05D010726 5.8e-10 70.5 228 25.4
Gohir.D06G179000 Gossypium hirsutum HOM05D008657 ORTHO05D010869 7.6e-10 70.1 51 58.8
Sc16g0009730 Simmondsia chinensis HOM05D007128 ORTHO05D009059 4.9e-09 67.4 239 24.7
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 4.9e-09 67.4 165 26.1
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 8.4e-09 66.6 207 24.6
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.1e-08 66.2 254 24.8
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 1.4e-08 65.9 132 25.0
MBI16_g32672_MAGBIO Magnolia biondii HOM05D008483 ORTHO05D010726 1.4e-08 65.9 205 26.3
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 1.9e-08 65.5 204 27.9
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 1.9e-08 65.5 220 29.1
MSTRG.12443 Avicennia marina HOM05D007455 ORTHO05D009431 2.7e-07 61.6 147 29.3
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 2.7e-07 61.6 156 28.2
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 3.5e-07 61.2 207 28.5
Hund13263 Selenicereus undatus HOM05D007128 ORTHO05D000105 3.5e-07 61.2 140 27.9
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 6.0e-07 60.5 209 22.5
PGR042G1965 Punica granatum HOM05D007675 ORTHO05D009699 7.9e-07 60.1 231 22.1
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 7.9e-07 60.1 166 26.5
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.3e-06 59.3 233 23.2
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 1.3e-06 59.3 128 23.4
Actinidia38410 Actinidia chinensis HOM05D007496 ORTHO05D009479 2.3e-06 58.5 211 28.0
Cfa004966 Carpinus fangiana HOM05D007675 ORTHO05D009699 2.3e-06 58.5 177 24.3
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 3.0e-06 58.2 164 25.6
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 3.9e-06 57.8 177 27.1
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 3.9e-06 57.8 128 25.8
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 3.9e-06 57.8 148 23.6
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 6.7e-06 57.0 211 22.7
Cc08_g05050 Coffea canephora HOM05D008483 ORTHO05D010726 6.7e-06 57.0 237 24.5
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 6.7e-06 57.0 177 24.3
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 6.7e-06 57.0 231 23.8
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 6.7e-06 57.0 134 26.1
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 6.7e-06 57.0 227 25.1
Sed0014874 Sechium edule HOM05D007496 ORTHO05D009479 6.7e-06 57.0 195 26.2
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 8.7e-06 56.6 132 22.0
Lj3C325T0 Lonicera japonica HOM05D008657 ORTHO05D010869 8.7e-06 56.6 59 44.1
HPP92_000173 Vanilla planifolia HOM05D008657 ORTHO05D010869 8.7e-06 56.6 213 36.2


User provided reference genes

Program Settings