Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p02850 Brassica napus HOM05D004476 ORTHO05D002200 8.8e-72 273.5 135 100.0
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 1.3e-27 126.7 63 100.0
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 1.3e-27 126.7 63 100.0
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 1.3e-27 126.7 63 100.0
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 1.3e-27 126.7 63 100.0
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 6.6e-27 124.4 63 96.8
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 6.6e-27 124.4 63 96.8
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 6.6e-27 124.4 63 96.8
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 6.6e-27 124.4 63 96.8
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 2.5e-26 122.5 63 95.2
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 2.5e-26 122.5 63 95.2
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 2.5e-26 122.5 63 95.2
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 2.5e-26 122.5 63 95.2
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 3.3e-26 122.1 63 93.7
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 5.6e-26 121.3 63 93.7
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 9.6e-26 120.6 63 92.1
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 1.3e-25 120.2 68 89.7
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 1.6e-25 119.8 63 93.7
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 1.8e-24 116.3 63 88.9
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 1.8e-24 116.3 63 88.9
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 1.8e-24 116.3 63 88.9
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 1.8e-24 116.3 63 88.9
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 1.8e-24 116.3 63 88.9
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 1.8e-24 116.3 63 88.9
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 3.1e-24 115.5 63 87.3
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 3.1e-24 115.5 63 87.3
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 3.1e-24 115.5 63 87.3
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 4.0e-24 115.2 63 87.3
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 4.0e-24 115.2 63 87.3
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 5.3e-24 114.8 63 87.3
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 1.2e-23 113.6 63 87.3
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 1.2e-23 113.6 63 85.7
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 1.5e-23 113.2 63 84.1
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 4.5e-23 111.7 63 84.1
A07p01390 Brassica napus HOM05D004476 ORTHO05D002200 4.5e-23 111.7 56 100.0
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 5.8e-23 111.3 63 82.5
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 1.3e-22 110.2 65 78.5
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 1.7e-22 109.8 63 82.5
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 2.2e-22 109.4 63 82.5
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 6.4e-22 107.8 63 79.4
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 8.4e-22 107.5 63 77.8
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 1.1e-21 107.1 63 79.4
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 1.4e-21 106.7 63 79.4
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 9.3e-21 104.0 63 74.6
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 9.3e-21 104.0 63 77.8
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.2e-20 103.6 63 74.6
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.2e-20 103.6 63 76.2
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 1.2e-20 103.6 63 76.2
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 1.6e-20 103.2 63 77.8
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 2.1e-20 102.8 63 76.2
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 2.1e-20 102.8 63 77.8
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 2.7e-20 102.4 63 76.2
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 2.7e-20 102.4 63 76.2
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 3.5e-20 102.1 63 76.2
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 3.5e-20 102.1 63 74.6
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 4.6e-20 101.7 63 73.0
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 4.6e-20 101.7 63 73.0
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 6.0e-20 101.3 63 76.2
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 1.0e-19 100.5 63 74.6
BcaC06g36567 Brassica carinata HOM05D037323 ORTHO05D093278 1.3e-19 100.1 115 50.4
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 1.3e-19 100.1 63 74.6
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 1.3e-19 100.1 63 74.6
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 1.8e-19 99.8 63 73.0
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 1.8e-19 99.8 61 75.4
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 1.8e-19 99.8 61 75.4
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 1.8e-19 99.8 63 74.6
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 1.8e-19 99.8 65 75.4
Hund06695 Selenicereus undatus HOM05D004476 ORTHO05D002200 1.8e-19 99.8 63 71.4
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 1.8e-19 99.8 63 73.0
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 2.3e-19 99.4 63 73.0
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 2.3e-19 99.4 63 71.4
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 2.3e-19 99.4 63 74.6
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 2.3e-19 99.4 63 73.0
AUR62027442 Chenopodium quinoa HOM05D004476 ORTHO05D002200 3.0e-19 99.0 65 67.7
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 3.0e-19 99.0 63 73.0
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 3.0e-19 99.0 63 71.4
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 3.9e-19 98.6 63 71.4
Glyma.15G168600 Glycine max HOM05D004476 ORTHO05D002200 3.9e-19 98.6 61 75.4
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 3.9e-19 98.6 65 73.8
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 3.9e-19 98.6 63 73.0
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 5.1e-19 98.2 63 73.0
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 5.1e-19 98.2 63 73.0
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 5.1e-19 98.2 61 75.4
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 5.1e-19 98.2 63 73.0
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 5.1e-19 98.2 63 73.0
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 5.1e-19 98.2 63 73.0
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 6.7e-19 97.8 63 68.3
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 6.7e-19 97.8 63 73.0
Phvul.009G233600 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 6.7e-19 97.8 61 73.8
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 8.7e-19 97.4 63 71.4
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 8.7e-19 97.4 63 69.8
ATR0580G349 Amborella trichopoda HOM05D004476 ORTHO05D002200 1.1e-18 97.1 63 74.6
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 1.1e-18 97.1 63 71.4
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 1.1e-18 97.1 63 73.0
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 1.5e-18 96.7 63 68.3
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 1.5e-18 96.7 63 73.0
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 1.5e-18 96.7 63 76.2
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 1.5e-18 96.7 74 70.3
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 1.9e-18 96.3 63 69.8
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 1.9e-18 96.3 63 73.0
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 2.5e-18 95.9 63 69.8
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 2.5e-18 95.9 63 69.8
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.5e-18 95.9 63 69.8
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.5e-18 95.9 63 69.8
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.5e-18 95.9 63 69.8
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 3.3e-18 95.5 63 66.7
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.3e-18 95.5 63 68.3
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 4.3e-18 95.1 61 72.1
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 4.3e-18 95.1 63 69.8
VMungo1309G0306 Vigna mungo HOM05D004476 ORTHO05D002200 4.3e-18 95.1 61 73.8
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 5.6e-18 94.7 63 71.4
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 5.6e-18 94.7 63 69.8
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 9.6e-18 94.0 63 68.3
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 9.6e-18 94.0 61 70.5
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 9.6e-18 94.0 61 70.5
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 1.6e-17 93.2 63 69.8
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 2.1e-17 92.8 63 69.8
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 2.1e-17 92.8 63 66.7
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 2.8e-17 92.4 63 73.0
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 2.8e-17 92.4 63 69.8
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 3.6e-17 92.0 63 68.3
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 6.2e-17 91.3 63 71.4
SalBow1G0556 Salvia bowleyana HOM05D004476 ORTHO05D002200 6.2e-17 91.3 63 68.3
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 8.1e-17 90.9 61 67.2
Sed0012081 Sechium edule HOM05D004476 ORTHO05D002200 8.1e-17 90.9 63 63.5
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.1e-16 90.5 61 67.2
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.1e-16 90.5 61 67.2
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 1.1e-16 90.5 61 67.2
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 1.1e-16 90.5 63 71.4
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 1.8e-16 89.7 63 68.3
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 2.4e-16 89.4 61 70.5
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 2.4e-16 89.4 63 69.8
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 5.3e-16 88.2 61 68.9
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 5.3e-16 88.2 70 60.0
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 1.2e-15 87.0 61 65.6
DCAR_017994 Daucus carota HOM05D004476 ORTHO05D002200 2.6e-15 85.9 66 66.7
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 3.4e-15 85.5 63 66.7
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 4.5e-15 85.1 64 68.8
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 4.5e-15 85.1 63 65.1
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 5.8e-15 84.7 61 62.3
DCAR_014680 Daucus carota HOM05D004476 ORTHO05D002200 7.6e-15 84.3 64 65.6
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 9.9e-15 84.0 64 67.2
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 1.7e-14 83.2 64 65.6
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 6.4e-14 81.3 61 62.3
RcHm_v2.0_Chr2g0106271 Rosa chinensis HOM05D004476 ORTHO05D002200 2.4e-13 79.3 66 56.1
RcHm_v2.0_Chr4g0391941 Rosa chinensis HOM05D004476 ORTHO05D002200 3.2e-13 79.0 69 59.4
Phvul.003G157700 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 5.5e-13 78.2 61 59.0
Zm00001eb206870 Zea mays HOM05D004476 ORTHO05D002200 1.6e-12 76.6 63 60.3
Mapoly0038s0099 Marchantia polymorpha HOM05D004476 ORTHO05D002200 3.5e-12 75.5 63 60.3
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 4.6e-12 75.1 63 57.1
Zm00001eb389280 Zea mays HOM05D004476 ORTHO05D002200 7.9e-12 74.3 63 55.6
Os02g0176400 Oryza sativa ssp. japonica HOM05D004476 ORTHO05D002200 1.0e-11 73.9 63 58.7
RcHm_v2.0_Chr3g0494811 Rosa chinensis HOM05D004476 ORTHO05D002200 1.0e-11 73.9 66 53.0
Pp3c12_21250 Physcomitrium patens HOM05D004476 ORTHO05D002200 1.8e-11 73.2 63 60.3
Nn8g40538 Nelumbo nucifera HOM05D004476 ORTHO05D002200 3.0e-11 72.4 57 64.9
Haze_24699 Corylus avellana HOM05D004476 ORTHO05D002200 3.3e-10 68.9 42 71.4
ECA236G3194 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.4e-08 63.5 71 50.7
Zm00001eb233560 Zea mays HOM05D053802 ORTHO05D002200 5.3e-08 61.6 63 52.4
SMO347G0074 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 1.2e-07 60.5 72 50.0
Eucgr.F03858 Eucalyptus grandis HOM05D004476 ORTHO05D002200 2.6e-07 59.3 48 62.5
Nitab4.5_0005445g0030 Nicotiana tabacum HOM05D004476 ORTHO05D002200 2.9e-06 55.8 44 63.6
BcaC04g20879 Brassica carinata HOM05D037323 ORTHO05D091849 8.4e-06 54.3 26 84.6


User provided reference genes

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