Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 7.2e-311 1069.7 527 100.0
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.5e-295 1018.1 502 100.0
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 5.2e-293 1010.4 505 98.8
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 5.2e-293 1010.4 505 98.8
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 4.1e-274 947.6 515 91.7
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 4.1e-274 947.6 502 94.0
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.5e-271 939.1 520 90.2
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.6e-262 909.1 520 87.3
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.4e-261 906.0 510 88.4
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.4e-261 906.0 510 88.4
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 5.8e-260 900.6 507 89.3
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-256 889.0 509 88.0
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 8.6e-256 886.7 509 87.8
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 8.6e-256 886.7 509 87.8
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.2e-254 882.9 518 86.1
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.2e-254 880.6 512 86.3
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 2.0e-252 875.5 521 84.8
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 8.3e-251 870.2 521 84.3
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.3e-232 808.9 518 79.5
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.4e-221 773.1 505 79.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.4e-204 715.3 503 72.0
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 5.0e-203 711.4 488 72.1
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.1e-202 710.3 483 72.0
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.4e-202 709.9 509 69.7
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 7.2e-202 707.6 494 70.6
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 7.9e-201 704.1 502 69.7
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.0e-200 703.7 426 79.1
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.8e-200 703.0 521 68.3
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.0e-199 699.5 485 70.7
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 3.3e-199 698.7 513 69.2
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 4.3e-199 698.4 492 70.9
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.3e-198 696.8 508 69.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.3e-198 696.8 532 68.0
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.7e-198 696.4 500 69.6
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 2.2e-198 696.0 482 71.2
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.1e-197 693.7 487 71.3
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.4e-197 693.3 531 67.4
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.8e-197 693.0 515 67.8
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.1e-197 692.2 522 68.0
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.1e-197 692.2 532 66.7
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 5.3e-197 691.4 486 70.6
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 3.4e-196 688.7 525 67.0
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 7.7e-196 687.6 480 72.7
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.2e-195 686.0 491 70.9
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 5.0e-195 684.9 495 70.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.1e-194 683.7 493 70.4
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.1e-194 683.7 493 70.2
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.4e-194 683.3 504 70.0
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.4e-194 683.3 486 71.4
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 5.5e-194 681.4 471 72.4
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 9.4e-194 680.6 514 67.1
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 1.2e-193 680.2 422 76.8
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.6e-193 679.9 478 71.1
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.6e-193 679.9 498 69.7
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 2.1e-193 679.5 471 72.0
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.6e-193 678.7 478 71.3
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 3.6e-193 678.7 503 69.0
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.6e-193 678.7 471 72.0
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 6.1e-193 677.9 514 66.7
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 3.9e-192 675.2 437 74.8
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 6.7e-192 674.5 502 67.7
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.7e-192 674.5 468 71.8
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 8.8e-192 674.1 484 68.6
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 8.8e-192 674.1 474 71.5
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.5e-191 673.3 449 72.6
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 4.4e-191 671.8 481 71.1
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 9.7e-191 670.6 522 66.5
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.7e-190 669.8 495 68.7
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 8.2e-190 667.5 504 67.1
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.4e-189 666.8 458 69.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 9.1e-189 664.1 440 73.6
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.5e-188 662.1 466 69.7
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.9e-187 659.1 474 71.9
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 6.5e-187 657.9 474 68.6
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.1e-186 657.1 487 68.2
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-186 656.4 433 72.1
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 7.2e-186 654.4 464 69.8
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 1.6e-185 653.3 442 71.9
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.6e-185 653.3 477 69.0
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.7e-185 652.5 422 74.6
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 6.1e-185 651.4 457 70.5
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 8.0e-185 651.0 439 72.7
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.0e-184 650.6 473 70.8
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.4e-184 650.2 477 68.8
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.8e-184 649.8 460 70.0
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 2.3e-184 649.4 456 71.1
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.9e-184 648.7 473 70.6
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.6e-183 646.0 502 65.1
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.3e-182 643.7 464 68.1
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.7e-182 643.3 492 67.7
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 2.2e-182 642.9 461 70.5
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-181 640.6 499 66.3
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 5.3e-181 638.3 519 62.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.1e-181 637.5 548 62.0
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 2.0e-180 636.3 480 66.9
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 3.5e-180 635.6 509 63.7
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.9e-179 632.5 418 72.5
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.8e-179 632.1 506 65.4
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-178 630.2 499 66.7
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 6.1e-177 624.8 456 66.2
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 8.0e-177 624.4 422 70.6
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.0e-175 619.8 577 58.4
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 6.3e-174 614.8 624 53.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 8.3e-174 614.4 444 69.1
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 9.4e-170 600.9 490 64.3
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 3.0e-168 595.9 520 62.9
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 4.0e-168 595.5 419 66.8
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 8.8e-168 594.3 589 56.0
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.2e-166 589.7 439 67.9
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 7.0e-165 584.7 427 67.7
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 8.6e-163 577.8 450 65.6
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 8.0e-161 571.2 426 63.4
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.8e-160 570.1 370 73.5
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 5.2e-160 568.5 457 60.4
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.0e-159 566.6 417 66.9
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.4e-159 565.5 432 63.7
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.3e-158 563.9 460 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.1e-157 558.9 443 60.7
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.7e-156 556.2 510 57.5
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.8e-156 554.7 553 57.1
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.7e-155 553.5 549 57.9
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.1e-154 550.8 450 64.7
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 2.5e-154 549.7 636 51.6
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.2e-153 547.4 445 64.5
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.0e-151 540.0 358 72.9
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.0e-151 540.0 418 65.6
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.0e-151 540.0 437 62.2
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 7.5e-151 538.1 513 57.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 3.7e-150 535.8 499 56.7
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.0e-147 526.2 435 63.0
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 4.7e-145 518.8 362 72.9
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 6.8e-144 515.0 435 62.1
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.7e-139 500.4 364 68.4
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.3e-139 500.0 400 65.0
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 2.3e-139 500.0 364 66.2
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.1e-137 493.4 469 55.7
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 2.1e-137 493.4 366 68.9
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 8.1e-137 491.5 370 67.6
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 1.1e-133 481.1 453 58.5
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.7e-132 476.5 328 70.4
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.5e-132 476.1 353 68.3
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.7e-131 473.8 413 61.0
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 3.6e-129 466.1 527 52.8
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.5e-122 443.4 433 56.1
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.6e-121 440.7 355 60.8
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 5.3e-120 435.6 321 67.9
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.6e-111 406.8 326 62.9
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 4.5e-111 406.0 276 72.1
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.4e-95 353.2 437 45.5
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.3e-94 351.3 211 77.3
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.1e-74 285.0 249 60.2
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.4e-72 278.1 301 54.8
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 7.0e-72 275.8 224 67.0
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 4.7e-68 263.1 146 82.2
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.3e-62 245.0 193 60.6
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.9e-62 243.8 325 48.6
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 9.4e-61 238.8 385 36.1
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 3.0e-59 233.8 155 72.9
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 2.0e-58 231.1 166 62.0
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-57 228.4 438 37.4
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 2.9e-54 217.2 184 65.8
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.0e-51 207.2 541 30.9
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.3e-41 172.6 102 78.4
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 8.9e-19 99.4 49 89.8
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.0e-18 98.2 222 32.4
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 5.8e-18 96.7 194 31.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 7.1e-16 89.7 51 80.4
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 2.7e-15 87.8 122 48.4
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 6.0e-15 86.7 51 80.4
BolC9t59358H Brassica oleracea HOM05D043452 ORTHO05D042342 2.4e-11 74.7 90 57.8
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.3e-09 68.9 54 61.1
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 2.2e-09 68.2 106 38.7
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.8e-09 67.4 36 80.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 2.1e-07 61.6 63 50.8
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 6.0e-07 60.1 52 55.8


User provided reference genes

Program Settings