Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p01970 Brassica napus HOM05D004163 ORTHO05D004882 4.6e-109 397.9 200 100.0
C07p12700 Brassica napus HOM05D004163 ORTHO05D004882 5.7e-91 337.8 254 72.0
BcaC05g29756 Brassica carinata HOM05D004163 ORTHO05D004882 7.2e-62 241.1 183 69.9
BolC5t34677H Brassica oleracea HOM05D001545 ORTHO05D001600 7.2e-62 241.1 183 69.9
BcaC05g29838 Brassica carinata HOM05D004163 ORTHO05D004882 2.7e-61 239.2 183 69.4
C05p60290 Brassica napus HOM05D001545 ORTHO05D001600 1.0e-60 237.3 183 68.9
Sp3g06030 Schrenkiella parvula HOM05D004163 ORTHO05D004882 9.7e-59 230.7 183 66.1
A05p41110 Brassica napus HOM05D004163 ORTHO05D004882 1.8e-57 226.5 183 67.8
BraA05t22837Z Brassica rapa HOM05D001545 ORTHO05D001600 1.8e-57 226.5 183 67.8
Thhalv10021308m.g Eutrema salsugineum HOM05D004163 ORTHO05D004882 3.2e-54 215.7 184 62.5
BcaB04g21309 Brassica carinata HOM05D004163 ORTHO05D004882 2.2e-50 203.0 166 65.7
AL3G18320 Arabidopsis lyrata HOM05D004163 ORTHO05D004882 1.8e-49 199.9 183 59.0
BcaC09g47939 Brassica carinata HOM05D004163 ORTHO05D004882 3.1e-49 199.1 169 61.5
BolC1t05569H Brassica oleracea HOM05D001545 ORTHO05D001600 3.1e-49 199.1 169 61.5
BcaB04g21311 Brassica carinata HOM05D004163 ORTHO05D004882 4.1e-49 198.7 177 61.6
Carub.0003s0660 Capsella rubella HOM05D004163 ORTHO05D004882 2.7e-48 196.1 185 58.4
AT3G07090 Arabidopsis thaliana HOM05D004163 ORTHO05D004882 2.9e-47 192.6 183 56.8
CARHR081680 Cardamine hirsuta HOM05D004163 ORTHO05D004882 1.5e-46 190.3 183 55.7
BraA01t04398Z Brassica rapa HOM05D004163 ORTHO05D004882 1.8e-44 183.3 174 57.5
BNapus_Darmor_BZH_scaffold_109p00240 Brassica napus HOM05D001545 ORTHO05D001600 2.6e-43 179.5 174 56.3
C07p01630 Brassica napus HOM05D004163 ORTHO05D004882 3.4e-43 179.1 112 86.6
THA.LOC104822505 Tarenaya hassleriana HOM05D004163 ORTHO05D004882 3.4e-43 179.1 180 51.7
Aa31LG5G17650 Aethionema arabicum HOM05D004163 ORTHO05D004882 3.1e-41 172.6 177 52.0
Gohir.A11G137300 Gossypium hirsutum HOM05D004163 ORTHO05D004882 3.5e-40 169.1 192 50.0
Aa31sc164G40 Aethionema arabicum HOM05D004163 ORTHO05D004882 7.8e-40 167.9 178 51.1
Cpa.g.sc8.162 Carica papaya HOM05D004163 ORTHO05D004882 1.7e-39 166.8 165 49.1
Gohir.D11G143700 Gossypium hirsutum HOM05D004163 ORTHO05D004882 8.6e-39 164.5 191 48.7
Gorai.007G153900 Gossypium raimondii HOM05D004163 ORTHO05D004882 3.3e-38 162.5 160 53.1
CANSAT01G0846 Cannabis sativa HOM05D004163 ORTHO05D004882 5.6e-38 161.8 185 49.7
Lalb_Chr01g0022371 Lupinus albus HOM05D004163 ORTHO05D004882 7.3e-38 161.4 131 60.3
CiPaw.04G105700 Carya illinoinensis HOM05D004163 ORTHO05D004882 1.2e-37 160.6 168 53.6
Eucgr.K02178 Eucalyptus grandis HOM05D004163 ORTHO05D004882 1.6e-37 160.2 189 48.1
TPR.G9029 Trifolium pratense HOM05D004163 ORTHO05D004882 2.1e-37 159.8 171 50.3
Manes.13G045400 Manihot esculenta HOM05D004163 ORTHO05D004882 3.6e-37 159.1 156 51.3
PGR044G0385 Punica granatum HOM05D004163 ORTHO05D004882 4.7e-37 158.7 182 48.4
Medtr7g058510 Medicago truncatula HOM05D004163 ORTHO05D004882 6.1e-37 158.3 189 48.1
CAN.G154.3 Capsicum annuum HOM05D004163 ORTHO05D004882 8.0e-37 157.9 204 45.1
Lj2A1132G68 Lonicera japonica HOM05D004163 ORTHO05D004882 8.0e-37 157.9 188 47.3
Nitab4.5_0000045g0110 Nicotiana tabacum HOM05D004163 ORTHO05D004882 8.0e-37 157.9 131 58.8
Dinv19207 Davidia involucrata HOM05D004163 ORTHO05D004882 1.0e-36 157.5 131 58.8
Nitab4.5_0006192g0030 Nicotiana tabacum HOM05D004163 ORTHO05D004882 1.0e-36 157.5 131 58.8
QL09p054666 Quercus lobata HOM05D004163 ORTHO05D004882 1.0e-36 157.5 168 52.4
Actinidia37588 Actinidia chinensis HOM05D004163 ORTHO05D004882 2.3e-36 156.4 132 57.6
COL.COLO4_08179 Corchorus olitorius HOM05D004163 ORTHO05D004882 2.3e-36 156.4 187 47.6
Glyma.18G170900 Glycine max HOM05D004163 ORTHO05D004882 3.0e-36 156.0 131 58.0
Gohir.A08G194200 Gossypium hirsutum HOM05D004163 ORTHO05D004882 3.0e-36 156.0 168 48.8
Psat3g145080 Pisum sativum HOM05D004163 ORTHO05D004882 4.0e-36 155.6 187 46.0
Atru.chr5.2002 Acer truncatum HOM05D004163 ORTHO05D004882 5.2e-36 155.2 182 50.0
Lj1g0012524 Lotus japonicus HOM05D004163 ORTHO05D004882 5.2e-36 155.2 184 46.7
TAR362G1211 Trochodendron aralioides HOM05D004163 ORTHO05D004882 5.2e-36 155.2 132 55.3
HanXRQChr15g0468291 Helianthus annuus HOM05D004163 ORTHO05D004882 6.8e-36 154.8 172 50.0
RcHm_v2.0_Chr6g0284951 Rosa chinensis HOM05D004163 ORTHO05D004882 6.8e-36 154.8 129 57.4
BcaC06g35635 Brassica carinata HOM05D004163 ORTHO05D004882 8.9e-36 154.5 159 61.0
Lalb_Chr03g0041791 Lupinus albus HOM05D004163 ORTHO05D004882 8.9e-36 154.5 131 58.0
Manes.12G047002 Manihot esculenta HOM05D004163 ORTHO05D004882 8.9e-36 154.5 166 52.4
Eucgr.K02173 Eucalyptus grandis HOM05D004163 ORTHO05D004882 1.2e-35 154.1 183 49.2
Hund05534 Selenicereus undatus HOM05D004163 ORTHO05D004882 1.2e-35 154.1 131 57.3
Hund05538 Selenicereus undatus HOM05D004163 ORTHO05D004882 1.2e-35 154.1 131 57.3
CiPaw.03G150300 Carya illinoinensis HOM05D004163 ORTHO05D004882 1.5e-35 153.7 188 46.8
FAN15G0391 Fragaria x ananassa HOM05D004163 ORTHO05D004882 1.5e-35 153.7 177 48.0
FAN27G1937 Fragaria x ananassa HOM05D004163 ORTHO05D004882 1.5e-35 153.7 177 48.0
Gohir.D08G212000 Gossypium hirsutum HOM05D004163 ORTHO05D004882 1.5e-35 153.7 188 43.6
Gorai.004G225400 Gossypium raimondii HOM05D004163 ORTHO05D004882 1.5e-35 153.7 188 44.1
MD10G1165200 Malus domestica HOM05D004163 ORTHO05D004882 1.5e-35 153.7 172 49.4
TWI18G0775 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 1.5e-35 153.7 182 49.5
Ciclev10021450m.g Citrus clementina HOM05D004163 ORTHO05D004882 3.4e-35 152.5 162 51.2
Phvul.008G125200 Phaseolus vulgaris HOM05D004163 ORTHO05D004882 3.4e-35 152.5 171 49.7
Glyma.08G354700 Glycine max HOM05D004163 ORTHO05D004882 4.4e-35 152.1 131 55.7
MD05G1176500 Malus domestica HOM05D004163 ORTHO05D004882 4.4e-35 152.1 175 48.6
Solyc09g061310.3 Solanum lycopersicum HOM05D004163 ORTHO05D004882 5.8e-35 151.8 167 49.7
Duzib133G0118 Durio zibethinus HOM05D004163 ORTHO05D004882 7.5e-35 151.4 191 45.0
GSVIVG01028648001 Vitis vinifera HOM05D004163 ORTHO05D004882 7.5e-35 151.4 186 47.8
Actinidia30080 Actinidia chinensis HOM05D004163 ORTHO05D004882 1.3e-34 150.6 196 46.4
FvH4_4g33290 Fragaria vesca HOM05D004163 ORTHO05D004882 1.3e-34 150.6 177 47.5
Sopen09g024070 Solanum pennellii HOM05D004163 ORTHO05D004882 1.3e-34 150.6 171 48.0
Sed0004920 Sechium edule HOM05D004163 ORTHO05D004882 1.7e-34 150.2 221 42.5
Thecc.01G226700 Theobroma cacao HOM05D004163 ORTHO05D004882 1.7e-34 150.2 188 45.7
PGSC0003DMG400017659 Solanum tuberosum HOM05D004163 ORTHO05D004882 2.2e-34 149.8 170 48.2
arahy.Tifrunner.gnm1.ann1.PP5Q2Q Arachis hypogaea HOM05D004163 ORTHO05D004882 2.9e-34 149.4 190 47.9
Prupe.8G203600 Prunus persica HOM05D004163 ORTHO05D004882 2.9e-34 149.4 173 47.4
vmacro14756 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 2.9e-34 149.4 182 46.2
ClCG09G009070 Citrullus lanatus HOM05D004163 ORTHO05D004882 3.7e-34 149.1 183 47.0
DCAR_012637 Daucus carota HOM05D004163 ORTHO05D004882 3.7e-34 149.1 128 55.5
Aqoxy2G03890 Aquilegia oxysepala HOM05D004163 ORTHO05D004882 4.9e-34 148.7 178 48.3
VMungo1383G2575 Vigna mungo HOM05D004163 ORTHO05D004882 6.4e-34 148.3 182 46.2
Migut.D00532 Erythranthe guttata HOM05D004163 ORTHO05D004882 8.3e-34 147.9 180 47.2
Nn3g19955 Nelumbo nucifera HOM05D004163 ORTHO05D004882 8.3e-34 147.9 187 47.1
Cc01_g17110 Coffea canephora HOM05D004163 ORTHO05D004882 1.1e-33 147.5 169 49.1
Sabra02G0184100 Salix brachista HOM05D004163 ORTHO05D004882 1.1e-33 147.5 129 55.0
Duzib138G0078 Durio zibethinus HOM05D004163 ORTHO05D004882 1.4e-33 147.1 197 46.2
arahy.Tifrunner.gnm1.ann1.IH4GAK Arachis hypogaea HOM05D004163 ORTHO05D004882 1.8e-33 146.7 184 46.2
HanXRQChr10g0279771 Helianthus annuus HOM05D004163 ORTHO05D004882 1.8e-33 146.7 165 47.9
Peaxi162Scf00107g01625 Petunia axillaris HOM05D004163 ORTHO05D004882 1.8e-33 146.7 182 49.5
ECA247G0816 Erigeron canadensis HOM05D004163 ORTHO05D004882 2.4e-33 146.4 170 48.8
Potri.002G241700 Populus trichocarpa HOM05D004163 ORTHO05D004882 3.2e-33 146.0 186 45.7
Ca_07522_v3 Cicer arietinum L. HOM05D004163 ORTHO05D004882 5.4e-33 145.2 187 43.9
SGA_v2.0_scaffold1G00744 Striga asiatica HOM05D004163 ORTHO05D004882 5.4e-33 145.2 179 46.4
Lsat_1_v5_gn_5_180180 Lactuca sativa HOM05D004163 ORTHO05D004882 7.0e-33 144.8 180 46.7
TWI36G1488 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 7.0e-33 144.8 172 47.7
MSTRG.17551 Avicennia marina HOM05D004163 ORTHO05D004882 9.2e-33 144.4 183 45.9
Lsat_1_v5_gn_9_12141 Lactuca sativa HOM05D004163 ORTHO05D004882 1.2e-32 144.1 126 55.6
PSO675G2819 Papaver somniferum HOM05D004163 ORTHO05D004882 1.2e-32 144.1 129 54.3
TAR633G1583 Trochodendron aralioides HOM05D004163 ORTHO05D004882 1.2e-32 144.1 131 52.7
MBI10_g18940_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.6e-32 143.7 185 45.9
AUR62031805 Chenopodium quinoa HOM05D004163 ORTHO05D004882 2.7e-32 142.9 131 53.4
Hma1.2p1_0970F.1_g242660 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 3.5e-32 142.5 185 44.3
Rhsim13G0044700 Rhododendron simsii HOM05D004163 ORTHO05D004882 3.5e-32 142.5 191 46.1
CDE02G0060 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 4.6e-32 142.1 182 45.6
Nn1g07844 Nelumbo nucifera HOM05D004163 ORTHO05D004882 6.0e-32 141.7 178 46.6
unitig_22.g6322 Utricularia gibba HOM05D004163 ORTHO05D004882 6.0e-32 141.7 129 55.0
vmacro02754 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 6.0e-32 141.7 177 45.8
ATR0736G127 Amborella trichopoda HOM05D004163 ORTHO05D004882 1.0e-31 141.0 129 51.9
Sed0020546 Sechium edule HOM05D004163 ORTHO05D004882 1.3e-31 140.6 174 44.8
BcaC06g36633 Brassica carinata HOM05D004163 ORTHO05D004882 1.7e-31 140.2 78 94.9
Os02g0814000 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 5.0e-31 138.7 133 51.9
MSTRG.21422 Avicennia marina HOM05D004163 ORTHO05D004882 6.6e-31 138.3 188 43.6
PSO339G2763 Papaver somniferum HOM05D004163 ORTHO05D004882 8.6e-31 137.9 176 45.5
PSO339G4819 Papaver somniferum HOM05D004163 ORTHO05D004882 8.6e-31 137.9 176 45.5
PSO832G2991 Papaver somniferum HOM05D004163 ORTHO05D004882 8.6e-31 137.9 176 45.5
HPP92_008969 Vanilla planifolia HOM05D004163 ORTHO05D004882 8.6e-31 137.9 163 47.2
AUR62008905 Chenopodium quinoa HOM05D004163 ORTHO05D004882 1.5e-30 137.1 176 45.5
CsaV3_7G025890 Cucumis sativus L. HOM05D004163 ORTHO05D004882 1.5e-30 137.1 183 42.6
DCAR_000532 Daucus carota HOM05D004163 ORTHO05D004882 1.5e-30 137.1 191 41.9
Zm00001eb258670 Zea mays HOM05D004163 ORTHO05D004882 5.6e-30 135.2 183 43.7
ClCG07G001940 Citrullus lanatus HOM05D004163 ORTHO05D004882 1.2e-29 134.0 137 51.8
CSS0028699 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 1.8e-28 130.2 177 45.8
CSS0045261 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 1.8e-28 130.2 177 45.8
MD05G1176100 Malus domestica HOM05D004163 ORTHO05D004882 2.3e-28 129.8 126 50.0
MELO3C026664.2 Cucumis melo HOM05D004163 ORTHO05D004882 4.9e-26 122.1 192 41.1
CsaV3_3G029920 Cucumis sativus L. HOM05D004163 ORTHO05D004882 4.9e-26 122.1 191 42.9
Os10g0472400 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 1.4e-25 120.6 163 41.1
Zm00001eb221910 Zea mays HOM05D004163 ORTHO05D004882 1.9e-25 120.2 137 46.0
ECA236G3105 Erigeron canadensis HOM05D004163 ORTHO05D004882 9.2e-25 117.9 185 42.7
HanXRQChr10g0287331 Helianthus annuus HOM05D004163 ORTHO05D004882 1.2e-24 117.5 128 46.1
HanXRQChr04g0110741 Helianthus annuus HOM05D004163 ORTHO05D004882 6.0e-24 115.2 131 45.0
AagrBONN_evm.TU.Sc2ySwM_117.3750 Anthoceros agrestis HOM05D004163 ORTHO05D004882 2.3e-23 113.2 129 45.0
Pp3c14_10250 Physcomitrium patens HOM05D004163 ORTHO05D004882 4.3e-22 109.0 183 37.7
Mapoly0051s0047 Marchantia polymorpha HOM05D004163 ORTHO05D004882 7.3e-22 108.2 171 38.0
CBR_g567 Chara braunii HOM05D004163 ORTHO05D004882 9.5e-22 107.8 126 45.2
Lsat_1_v5_gn_8_90020 Lactuca sativa HOM05D004163 ORTHO05D004882 2.8e-21 106.3 169 39.6
Cpa.g.sc997.5 Carica papaya HOM05D004163 ORTHO05D004882 2.3e-20 103.2 145 42.8
SMO146G0295 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 3.1e-20 102.8 173 37.0
MBI16_g22910_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.5e-19 100.5 148 40.5
SHI28736 Sapria himalayana HOM05D004163 ORTHO05D004882 7.5e-19 98.2 73 56.2
Pp3c11_1330 Physcomitrium patens HOM05D004163 ORTHO05D004882 1.3e-18 97.4 125 38.4
MBI15_g26747_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 2.2e-18 96.7 183 37.7
EL10Ac7g17826 Beta vulgaris HOM05D004163 ORTHO05D004882 4.9e-18 95.5 140 44.3
C07p01620 Brassica napus HOM05D004163 ORTHO05D004882 2.1e-16 90.1 44 90.9
MELO3C021008.2 Cucumis melo HOM05D004163 ORTHO05D004882 2.7e-16 89.7 154 37.7
MCO11G711 Micromonas commoda HOM05D004163 ORTHO05D004882 1.3e-15 87.4 72 51.4
Cre12.g555850 Chlamydomonas reinhardtii HOM05D004163 ORTHO05D004882 1.7e-15 87.0 72 52.8
SMO173G0033 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 1.1e-14 84.3 63 58.7
PRCOL_00000114 Prasinoderma coloniale HOM05D004163 ORTHO05D004882 2.5e-14 83.2 120 36.7
BolC7t40606H Brassica oleracea HOM05D004163 ORTHO05D004882 4.3e-14 82.4 78 61.5
MBI05_g47467_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.4e-12 77.4 113 40.7
Sc24g0003580 Simmondsia chinensis HOM05D004163 ORTHO05D004882 1.4e-12 77.4 126 38.9
Os02g0788133 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 5.4e-09 65.5 43 60.5
FvH4_2g19170 Fragaria vesca HOM05D004163 ORTHO05D004882 1.2e-08 64.3 153 34.6
CDE01G0537 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 1.6e-08 63.9 30 86.7
MBI18_g31614_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.3e-07 60.8 132 36.4


User provided reference genes

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