Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p01900 Brassica napus HOM05D004686 ORTHO05D005988 4.3e-101 371.3 187 100.0
BcaC05g28207 Brassica carinata HOM05D004686 ORTHO05D005988 1.8e-75 286.2 158 91.8
C05p43110 Brassica napus HOM05D004686 ORTHO05D005988 1.8e-75 286.2 158 91.8
BolC5t33041H Brassica oleracea HOM05D004686 ORTHO05D005988 1.8e-75 286.2 158 91.8
A05p27770 Brassica napus HOM05D004686 ORTHO05D005988 4.1e-75 285.0 158 91.1
BraA05t21664Z Brassica rapa HOM05D004686 ORTHO05D005988 4.1e-75 285.0 158 91.1
BcaB06g26171 Brassica carinata HOM05D004686 ORTHO05D005988 5.3e-75 284.6 158 91.1
Sp3g18970 Schrenkiella parvula HOM05D004686 ORTHO05D005988 3.4e-74 282.0 158 90.5
AT3G20970 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 5.9e-74 281.2 158 90.5
CARHR096860 Cardamine hirsuta HOM05D004686 ORTHO05D005988 5.9e-74 281.2 158 89.9
Thhalv10021272m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 2.2e-73 279.3 158 88.6
Carub.0003s2093 Capsella rubella HOM05D004686 ORTHO05D005988 6.5e-73 277.7 158 88.6
BcaC05g26273 Brassica carinata HOM05D004686 ORTHO05D005988 1.4e-70 270.0 160 88.1
THA.LOC104816877 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 2.0e-69 266.2 158 82.3
Carub.0001s4026 Capsella rubella HOM05D004686 ORTHO05D005988 4.4e-69 265.0 158 82.9
Thhalv10011711m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 7.4e-69 264.2 158 82.9
CARHR041540 Cardamine hirsuta HOM05D004686 ORTHO05D005988 9.7e-69 263.8 157 83.4
BcaC08g43308 Brassica carinata HOM05D004686 ORTHO05D005988 1.7e-68 263.1 158 82.3
A06p02520 Brassica napus HOM05D004686 ORTHO05D005988 1.7e-68 263.1 158 81.6
C06p06550 Brassica napus HOM05D004686 ORTHO05D005988 1.7e-68 263.1 158 82.3
AL1G59240 Arabidopsis lyrata HOM05D004686 ORTHO05D005988 2.2e-68 262.7 157 82.8
BcaB07g33585 Brassica carinata HOM05D004686 ORTHO05D005988 2.2e-68 262.7 158 81.6
BraA06t23459Z Brassica rapa HOM05D004686 ORTHO05D005988 2.2e-68 262.7 158 81.6
Ciclev10032367m.g Citrus clementina HOM05D004686 ORTHO05D005988 6.3e-68 261.2 158 80.4
BolC6t35767H Brassica oleracea HOM05D004686 ORTHO05D005988 1.1e-67 260.4 158 81.6
Haze_14265 Corylus avellana HOM05D004686 ORTHO05D005988 1.4e-67 260.0 158 81.0
Sp1g38060 Schrenkiella parvula HOM05D004686 ORTHO05D005988 1.4e-67 260.0 158 81.0
AT1G51390 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 1.8e-67 259.6 158 81.0
RcHm_v2.0_Chr2g0118911 Rosa chinensis HOM05D004686 ORTHO05D005988 2.4e-67 259.2 158 81.0
BcaC06g36644 Brassica carinata HOM05D004686 ORTHO05D005988 3.1e-67 258.8 130 99.2
BolC7t40596H Brassica oleracea HOM05D004686 ORTHO05D005988 3.1e-67 258.8 130 99.2
THA.LOC104817910 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 3.1e-67 258.8 158 81.0
HanXRQChr07g0194231 Helianthus annuus HOM05D004686 ORTHO05D005988 7.0e-67 257.7 159 78.0
Lj2C31G19 Lonicera japonica HOM05D004686 ORTHO05D005988 7.0e-67 257.7 157 80.3
arahy.Tifrunner.gnm1.ann1.GZ7TSK Arachis hypogaea HOM05D004686 ORTHO05D005988 9.1e-67 257.3 158 80.4
arahy.Tifrunner.gnm1.ann1.R2EQ4U Arachis hypogaea HOM05D004686 ORTHO05D005988 9.1e-67 257.3 158 80.4
Rhsim03G0100800 Rhododendron simsii HOM05D004686 ORTHO05D005988 9.1e-67 257.3 161 77.6
Medtr3g073070 Medicago truncatula HOM05D004686 ORTHO05D005988 1.2e-66 256.9 158 78.5
Psat6g239000 Pisum sativum HOM05D004686 ORTHO05D005988 1.2e-66 256.9 157 78.3
Cpa.g.sc563.1 Carica papaya HOM05D004686 ORTHO05D005988 1.5e-66 256.5 157 82.2
Cfa007809 Carpinus fangiana HOM05D004686 ORTHO05D005988 1.5e-66 256.5 158 79.7
QL04p044815 Quercus lobata HOM05D004686 ORTHO05D005988 1.5e-66 256.5 157 78.3
FvH4_1g23510 Fragaria vesca HOM05D004686 ORTHO05D005988 2.0e-66 256.1 158 80.4
Duzib128G0508 Durio zibethinus HOM05D004686 ORTHO05D005988 2.6e-66 255.8 158 77.2
GSVIVG01011272001 Vitis vinifera HOM05D004686 ORTHO05D005988 2.6e-66 255.8 158 79.1
arahy.Tifrunner.gnm1.ann1.XFSN2Q Arachis hypogaea HOM05D004686 ORTHO05D005988 3.5e-66 255.4 166 75.9
Medtr1g069215 Medicago truncatula HOM05D004686 ORTHO05D005988 3.5e-66 255.4 157 79.0
TPR.G10412 Trifolium pratense HOM05D004686 ORTHO05D005988 3.5e-66 255.4 157 79.0
Sc20g0001200 Simmondsia chinensis HOM05D004686 ORTHO05D005988 5.9e-66 254.6 158 77.8
CANSAT56G3264 Cannabis sativa HOM05D004686 ORTHO05D005988 7.7e-66 254.2 158 79.1
CiPaw.13G038400 Carya illinoinensis HOM05D004686 ORTHO05D005988 7.7e-66 254.2 158 77.8
Dinv02032 Davidia involucrata HOM05D004686 ORTHO05D005988 7.7e-66 254.2 158 78.5
Gohir.D05G288800 Gossypium hirsutum HOM05D004686 ORTHO05D005988 7.7e-66 254.2 158 77.8
Gorai.009G303900 Gossypium raimondii HOM05D004686 ORTHO05D005988 7.7e-66 254.2 158 77.8
Ah.12g062170 Amaranthus hybridus HOM05D004686 ORTHO05D005988 1.0e-65 253.8 158 79.1
Dinv11852 Davidia involucrata HOM05D004686 ORTHO05D005988 1.0e-65 253.8 158 78.5
Sabra10G0185800 Salix brachista HOM05D001373 ORTHO05D005988 1.0e-65 253.8 157 79.6
Sed0018572 Sechium edule HOM05D004686 ORTHO05D005988 1.0e-65 253.8 158 79.7
Thecc.10G107700 Theobroma cacao HOM05D004686 ORTHO05D005988 1.0e-65 253.8 158 78.5
Manes.10G058150 Manihot esculenta HOM05D004686 ORTHO05D005988 1.3e-65 253.4 158 79.7
HanXRQChr11g0342241 Helianthus annuus HOM05D004686 ORTHO05D005988 2.2e-65 252.7 158 77.2
MD04G1028700 Malus domestica HOM05D004686 ORTHO05D005988 2.9e-65 252.3 158 78.5
Phvul.007G008000 Phaseolus vulgaris HOM05D004686 ORTHO05D005988 2.9e-65 252.3 158 77.8
Actinidia34718 Actinidia chinensis HOM05D004686 ORTHO05D005988 3.8e-65 251.9 158 77.2
Lalb_Chr06g0164101 Lupinus albus HOM05D004686 ORTHO05D005988 3.8e-65 251.9 158 79.1
Potri.010G237400 Populus trichocarpa HOM05D004686 ORTHO05D005988 3.8e-65 251.9 157 78.3
Gohir.A05G287600 Gossypium hirsutum HOM05D004686 ORTHO05D005988 5.0e-65 251.5 158 77.2
TWI63G0038 Tripterygium wilfordii HOM05D004686 ORTHO05D005988 5.0e-65 251.5 158 79.1
VMungo0720G1764 Vigna mungo HOM05D004686 ORTHO05D005988 5.0e-65 251.5 158 77.8
DCAR_019313 Daucus carota HOM05D004686 ORTHO05D005988 6.5e-65 251.1 158 77.2
MELO3C019892.2 Cucumis melo HOM05D004686 ORTHO05D005988 8.5e-65 250.8 158 79.1
CsaV3_6G004170 Cucumis sativus L. HOM05D004686 ORTHO05D005988 8.5e-65 250.8 158 79.1
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.1e-64 250.4 157 77.1
Nn5g28600 Nelumbo nucifera HOM05D004686 ORTHO05D005988 1.1e-64 250.4 158 77.8
Prupe.2G079800 Prunus persica HOM05D004686 ORTHO05D005988 1.1e-64 250.4 158 77.2
TAR633G2407 Trochodendron aralioides HOM05D004686 ORTHO05D005988 1.1e-64 250.4 158 76.6
Atru.chr12.1003 Acer truncatum HOM05D004686 ORTHO05D005988 1.5e-64 250.0 158 76.6
Aa31LG10G3560 Aethionema arabicum HOM05D004686 ORTHO05D005988 1.5e-64 250.0 157 78.3
Dinv09596 Davidia involucrata HOM05D004686 ORTHO05D005988 1.5e-64 250.0 158 77.2
Aqoxy3G00701 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 1.9e-64 249.6 158 77.2
EL10Ac5g11629 Beta vulgaris HOM05D004686 ORTHO05D005988 1.9e-64 249.6 158 78.5
SalBow6G2690 Salvia bowleyana HOM05D004686 ORTHO05D005988 1.9e-64 249.6 161 76.4
TAR636G3245 Trochodendron aralioides HOM05D004686 ORTHO05D005988 1.9e-64 249.6 158 77.2
arahy.Tifrunner.gnm1.ann1.N4KLNP Arachis hypogaea HOM05D004686 ORTHO05D005988 2.5e-64 249.2 166 74.1
ClCG08G008200 Citrullus lanatus HOM05D004686 ORTHO05D005988 2.5e-64 249.2 157 78.3
ECA238G0678 Erigeron canadensis HOM05D004686 ORTHO05D005988 2.5e-64 249.2 158 76.6
Rhsim09G0142900 Rhododendron simsii HOM05D004686 ORTHO05D005988 2.5e-64 249.2 158 77.8
Atru.chr4.937 Acer truncatum HOM05D004686 ORTHO05D005988 3.2e-64 248.8 158 76.6
AUR62037089 Chenopodium quinoa HOM05D004686 ORTHO05D005988 3.2e-64 248.8 158 75.9
Lsat_1_v5_gn_2_104981 Lactuca sativa HOM05D004686 ORTHO05D005988 3.2e-64 248.8 158 75.9
Eucgr.G02697 Eucalyptus grandis HOM05D004686 ORTHO05D005988 4.2e-64 248.4 158 77.8
ATR0820G097 Amborella trichopoda HOM05D004686 ORTHO05D005988 9.4e-64 247.3 158 77.2
FAN28G2368 Fragaria x ananassa HOM05D004686 ORTHO05D005988 9.4e-64 247.3 174 73.6
PGR142G2157 Punica granatum HOM05D004686 ORTHO05D005988 9.4e-64 247.3 158 75.3
Glyma.20G242200 Glycine max HOM05D004686 ORTHO05D005988 1.6e-63 246.5 158 76.6
Lj5g0008296 Lotus japonicus HOM05D004686 ORTHO05D005988 1.6e-63 246.5 158 75.9
Aqoxy2G01234 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 2.1e-63 246.1 158 75.9
CAN.G730.34 Capsicum annuum HOM05D004686 ORTHO05D005988 2.1e-63 246.1 155 76.1
FAN26G2913 Fragaria x ananassa HOM05D004686 ORTHO05D005988 2.1e-63 246.1 174 73.0
Zm00001eb346110 Zea mays HOM05D004686 ORTHO05D005988 2.1e-63 246.1 157 75.8
FAN19G3154 Fragaria x ananassa HOM05D004686 ORTHO05D005988 2.7e-63 245.7 174 73.0
HPP92_001974 Vanilla planifolia HOM05D004686 ORTHO05D005988 3.6e-63 245.4 161 75.8
MSTRG.9090 Avicennia marina HOM05D004686 ORTHO05D005988 4.7e-63 245.0 155 76.1
Sabra08G0014900 Salix brachista HOM05D004686 ORTHO05D005988 4.7e-63 245.0 157 77.1
PSO339G5017 Papaver somniferum HOM05D004686 ORTHO05D005988 1.0e-62 243.8 158 74.1
Solyc11g007120.2 Solanum lycopersicum HOM05D004686 ORTHO05D005988 1.4e-62 243.4 155 74.8
Sopen11g003040 Solanum pennellii HOM05D004686 ORTHO05D005988 1.4e-62 243.4 155 74.8
unitig_0.g763 Utricularia gibba HOM05D004686 ORTHO05D005988 1.4e-62 243.4 155 74.8
Nitab4.5_0001437g0190 Nicotiana tabacum HOM05D004686 ORTHO05D005988 2.3e-62 242.7 158 74.7
PSO384G4844 Papaver somniferum HOM05D004686 ORTHO05D005988 2.3e-62 242.7 158 73.4
Nitab4.5_0003774g0030 Nicotiana tabacum HOM05D004686 ORTHO05D005988 3.0e-62 242.3 155 76.1
Os05g0155300 Oryza sativa ssp. japonica HOM05D004686 ORTHO05D005988 3.0e-62 242.3 158 74.7
SEGI_01464 Sequoiadendron giganteum HOM05D004686 ORTHO05D005988 3.0e-62 242.3 158 72.8
SGA_v2.0_scaffold62G21346 Striga asiatica HOM05D004686 ORTHO05D005988 4.0e-62 241.9 155 76.1
Migut.F00905 Erythranthe guttata HOM05D004686 ORTHO05D005988 1.5e-61 240.0 155 74.8
Peaxi162Scf00173g00068 Petunia axillaris HOM05D004686 ORTHO05D005988 2.0e-61 239.6 155 74.2
PGSC0003DMG400019464 Solanum tuberosum HOM05D004686 ORTHO05D005988 2.0e-61 239.6 155 73.5
SMO119G0422 Selaginella moellendorffii HOM05D004686 ORTHO05D005988 4.4e-61 238.4 158 72.8
Pp3c3_25460 Physcomitrium patens HOM05D004686 ORTHO05D005988 1.3e-60 236.9 158 75.3
Cc02_g09830 Coffea canephora HOM05D004686 ORTHO05D005988 8.2e-60 234.2 155 72.3
Mapoly0010s0052 Marchantia polymorpha HOM05D004686 ORTHO05D005988 1.4e-59 233.4 158 70.9
AagrBONN_evm.TU.Sc2ySwM_117.1090 Anthoceros agrestis HOM05D004686 ORTHO05D005988 4.1e-59 231.9 158 71.5
CDE08G1288 Ceratophyllum demersum HOM05D004686 ORTHO05D005988 6.5e-57 224.6 155 72.3
AUR62038365 Chenopodium quinoa HOM05D004686 ORTHO05D005988 5.5e-56 221.5 132 82.6
Oeu030507.2 Olea europaea HOM05D004686 ORTHO05D005988 7.2e-56 221.1 132 82.6
Oeu030509.1 Olea europaea HOM05D004686 ORTHO05D005988 7.2e-56 221.1 132 82.6
CBR_g48305 Chara braunii HOM05D004686 ORTHO05D005988 1.4e-54 216.9 155 67.1
AagrBONN_evm.TU.Sc2ySwM_362.2258 Anthoceros agrestis HOM05D004686 ORTHO05D005988 6.8e-54 214.5 155 66.5
C05p22850 Brassica napus HOM05D004686 ORTHO05D005988 4.4e-53 211.8 157 73.2
Migut.F01616 Erythranthe guttata HOM05D004686 ORTHO05D005988 5.7e-53 211.5 155 70.3
AagrBONN_evm.TU.Sc2ySwM_117.3971 Anthoceros agrestis HOM05D004686 ORTHO05D005988 1.8e-51 206.5 189 59.3
Pp3c10_14710 Physcomitrium patens HOM05D004686 ORTHO05D005988 9.4e-48 194.1 145 67.6
PRCOL_00006553 Prasinoderma coloniale HOM05D004686 ORTHO05D005988 9.4e-48 194.1 154 61.7
Cre12.g504150 Chlamydomonas reinhardtii HOM05D004686 ORTHO05D005988 2.7e-47 192.6 153 58.8
MCO10G342 Micromonas commoda HOM05D004686 ORTHO05D005988 9.8e-45 184.1 153 58.2
Potri.008G022000 Populus trichocarpa HOM05D004686 ORTHO05D005988 3.0e-38 162.5 106 75.5
CSS0027430 Camellia sinensis var. sinensis HOM05D004686 ORTHO05D005988 5.4e-35 151.8 93 78.5
Psat3g105760 Pisum sativum HOM05D004686 ORTHO05D005988 1.7e-33 146.7 114 66.7
Cfa026205 Carpinus fangiana HOM05D004686 ORTHO05D005988 3.9e-33 145.6 151 51.7
Haze_26891 Corylus avellana HOM05D004686 ORTHO05D005988 1.1e-32 144.1 158 47.5
AagrBONN_evm.TU.Sc2ySwM_117.3974 Anthoceros agrestis HOM05D004686 ORTHO05D005988 1.4e-30 137.1 157 52.9
arahy.Tifrunner.gnm1.ann1.0744GE Arachis hypogaea HOM05D000145 ORTHO05D000115 2.4e-27 126.3 74 81.1
Carub.0162s0001 Capsella rubella HOM05D004686 ORTHO05D005988 9.2e-27 124.4 74 81.1
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 1.6e-26 123.6 75 80.0
AL3G34930 Arabidopsis lyrata HOM05D004686 ORTHO05D005988 2.7e-26 122.9 66 89.4
Nitab4.5_0001437g0120 Nicotiana tabacum HOM05D004686 ORTHO05D005988 2.3e-22 109.8 105 54.3
Rhsim03G0100900 Rhododendron simsii HOM05D004686 ORTHO05D005988 3.1e-22 109.4 103 54.4
Psat7g160920 Pisum sativum HOM05D004686 ORTHO05D005988 1.3e-20 104.0 69 73.9
CDE06G1789 Ceratophyllum demersum HOM05D004686 ORTHO05D005988 1.0e-17 94.4 155 41.3
BcaB03g16327 Brassica carinata HOM05D002341 ORTHO05D039489 3.6e-15 85.9 56 78.6
BcaB02g10852 Brassica carinata HOM05D004686 ORTHO05D001378 1.7e-12 77.0 44 84.1
SHI21636 Sapria himalayana HOM05D004686 ORTHO05D005988 4.6e-10 68.9 81 42.0
Actinidia31100 Actinidia chinensis HOM05D004686 ORTHO05D005988 1.0e-09 67.8 71 50.7
C05p35820 Brassica napus HOM05D004686 ORTHO05D027932 4.3e-08 62.4 41 75.6
BolC5t32300H Brassica oleracea HOM05D004686 ORTHO05D027932 4.3e-08 62.4 41 75.6
C09p31040 Brassica napus HOM05D004686 ORTHO05D027932 1.2e-07 60.8 41 73.2
BolC9t55963H Brassica oleracea HOM05D004686 ORTHO05D027932 1.2e-07 60.8 41 73.2
MCO13G021 Micromonas commoda HOM05D001654 ORTHO05D002773 1.4e-06 57.4 82 39.0
CSS0011091 Camellia sinensis var. sinensis HOM05D004686 ORTHO05D005988 3.1e-06 56.2 33 81.8
ATR1134G081 Amborella trichopoda HOM05D001654 ORTHO05D002773 5.2e-06 55.5 76 39.5
Migut.N00825 Erythranthe guttata HOM05D001654 ORTHO05D002773 6.8e-06 55.1 86 41.9
Solyc01g103710.4 Solanum lycopersicum HOM05D001654 ORTHO05D002773 6.8e-06 55.1 88 36.4


User provided reference genes

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