Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 4.0e-218 761.1 388 100.0
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.4e-215 751.9 388 98.7
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 4.5e-185 651.4 369 93.2
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.3e-179 633.3 376 85.9
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.5e-169 599.7 406 77.3
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 7.2e-159 564.3 422 74.4
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 5.5e-143 511.5 402 72.1
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.1e-130 470.7 463 60.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 7.3e-119 431.4 405 63.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 6.2e-118 428.3 440 59.8
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 4.6e-113 412.1 409 61.6
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 9.9e-92 341.3 214 77.1
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 4.2e-90 335.9 320 62.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 4.2e-90 335.9 320 62.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.8e-72 277.3 168 75.0
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.5e-66 256.9 303 47.5
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 6.7e-64 248.8 192 63.5
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.1e-63 248.1 263 50.2
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.1e-63 248.1 299 47.2
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.5e-63 246.9 293 51.2
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 9.7e-63 245.0 153 74.5
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.7e-62 244.2 201 60.2
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.8e-62 243.4 186 61.8
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.8e-62 243.4 186 61.8
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 3.7e-62 243.0 157 71.3
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 3.7e-62 243.0 166 66.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 4.8e-62 242.7 161 69.6
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.1e-61 239.6 175 66.3
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 9.1e-61 238.4 294 48.0
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.5e-60 237.7 201 58.2
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.0e-60 237.3 199 60.3
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 4.5e-60 236.1 166 66.9
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.5e-60 236.1 175 65.7
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.7e-60 235.3 166 66.3
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.2e-59 233.8 197 57.4
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 2.2e-59 233.8 311 47.6
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.9e-59 233.4 197 57.4
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.9e-59 233.4 197 57.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 5.0e-59 232.6 269 52.0
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 5.0e-59 232.6 152 71.7
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 5.0e-59 232.6 152 71.7
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 6.5e-59 232.3 166 65.7
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 8.5e-59 231.9 155 67.7
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-58 231.5 302 45.7
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.4e-58 231.1 151 71.5
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.4e-58 231.1 151 71.5
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.5e-58 230.3 152 71.1
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.2e-58 229.9 149 70.5
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 4.2e-58 229.6 152 70.4
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 4.2e-58 229.6 168 63.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 4.2e-58 229.6 168 63.1
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 5.5e-58 229.2 163 66.9
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 7.2e-58 228.8 174 60.9
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 9.4e-58 228.4 167 63.5
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.7e-57 226.1 158 67.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.1e-57 225.7 310 42.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 6.1e-57 225.7 185 60.0
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.0e-56 224.9 185 60.0
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.4e-56 224.6 263 47.5
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 3.0e-56 223.4 173 60.7
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.0e-56 223.4 152 67.1
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 3.9e-56 223.0 158 67.1
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.5e-55 221.1 172 60.5
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.7e-55 219.2 156 64.1
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 5.7e-55 219.2 164 63.4
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.7e-55 219.2 147 68.7
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 7.4e-55 218.8 172 60.5
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 7.4e-55 218.8 172 60.5
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 7.4e-55 218.8 172 60.5
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 7.4e-55 218.8 172 60.5
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 9.7e-55 218.4 155 65.2
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 9.7e-55 218.4 156 64.1
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.2e-54 217.2 198 57.6
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.2e-54 217.2 198 57.6
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 3.7e-54 216.5 174 63.2
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.8e-53 214.2 283 48.8
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-53 214.2 176 60.8
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 3.1e-53 213.4 330 40.3
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 5.3e-53 212.6 181 58.0
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 7.0e-53 212.2 277 43.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.6e-52 210.3 276 47.1
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.5e-52 209.9 161 63.4
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 4.5e-52 209.5 181 53.6
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 4.5e-52 209.5 140 67.1
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 7.7e-52 208.8 165 58.8
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 7.7e-52 208.8 146 65.1
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.3e-51 208.0 144 69.4
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.2e-51 207.2 164 58.5
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.2e-51 207.2 173 59.5
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.9e-51 206.8 166 60.2
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.9e-51 206.8 192 53.6
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.9e-51 206.8 168 58.9
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.9e-51 206.8 153 59.5
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 3.8e-51 206.5 140 67.1
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 6.5e-51 205.7 314 41.1
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.5e-50 204.5 324 40.1
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.9e-50 204.1 175 55.4
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 4.2e-50 203.0 155 63.2
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 5.5e-50 202.6 181 56.4
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.7e-49 199.5 105 88.6
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 4.7e-49 199.5 316 40.8
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 2.3e-48 197.2 154 60.4
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.3e-48 197.2 146 60.3
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 8.8e-48 195.3 186 55.4
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.1e-47 194.9 255 43.5
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.5e-47 194.5 145 60.7
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.6e-47 193.7 266 45.5
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.8e-46 190.3 156 57.7
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 5.9e-44 182.6 178 51.7
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 2.2e-43 180.6 173 52.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 3.8e-43 179.9 199 49.7
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 9.4e-42 175.3 175 50.3
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 6.1e-41 172.6 133 59.4
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.0e-40 169.9 135 61.5
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 6.8e-40 169.1 152 55.3
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 8.8e-40 168.7 157 53.5
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 2.6e-39 167.2 133 57.9
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.8e-37 161.0 103 71.8
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 2.4e-37 160.6 156 52.6
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 2.9e-35 153.7 135 50.4
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.9e-34 151.0 174 45.4
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.6e-33 147.9 132 54.5
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.7e-33 147.1 171 43.3
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.4e-32 144.8 94 69.1
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 2.0e-31 141.0 134 51.5
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.3e-30 138.3 99 60.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.0e-27 128.6 133 43.6
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-27 128.6 98 61.2
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.7e-27 127.9 99 60.6
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 4.2e-26 123.2 172 40.7
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.5e-26 122.1 95 57.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 6.1e-25 119.4 95 58.9
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.3e-24 117.5 140 46.4
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 4.9e-22 109.8 80 63.8
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.2e-21 107.1 97 53.6
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-20 105.1 59 74.6
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.0e-19 102.1 68 67.6
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.2e-16 89.7 76 56.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-15 88.6 101 49.5
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.5e-15 88.2 107 45.8
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.0e-15 87.8 75 52.0
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 4.4e-15 86.7 103 47.6
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.8e-15 86.3 69 60.9
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 6.4e-14 82.8 195 39.0
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-12 78.6 77 51.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.7e-11 74.7 89 44.9
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 5.6e-10 69.7 62 51.6
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 8.9e-08 62.4 47 59.6
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 1.2e-07 62.0 36 72.2
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 4.4e-07 60.1 50 58.0
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 2.2e-06 57.8 102 39.2


User provided reference genes

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