Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 2.1e-144 515.8 279 100.0
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 4.4e-41 172.6 446 37.9
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.6e-38 164.1 446 37.2
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 3.4e-33 146.4 122 75.4
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 7.5e-33 145.2 121 73.6
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 7.5e-33 145.2 453 35.1
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 2.4e-31 140.2 448 34.4
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 3.2e-31 139.8 450 34.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.6e-30 137.5 121 70.2
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 4.6e-30 136.0 448 33.9
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 2.3e-29 133.7 448 33.7
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 3.0e-29 133.3 450 33.6
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.8e-27 126.7 449 33.4
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.2e-23 113.2 127 60.6
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.6e-14 84.3 125 48.0
A07p00700 Brassica napus HOM05D004485 ORTHO05D040257 6.0e-14 82.4 85 63.5
BraA07t27869Z Brassica rapa HOM05D004485 ORTHO05D040257 3.9e-13 79.7 85 62.4
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 5.1e-13 79.3 70 72.9
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 6.6e-13 79.0 110 50.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 4.3e-12 76.3 117 45.3
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 4.3e-12 76.3 70 64.3
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 4.3e-12 76.3 70 64.3
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 5.6e-12 75.9 76 61.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 5.6e-12 75.9 70 64.3
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 7.3e-12 75.5 92 50.0
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 9.5e-12 75.1 152 41.4
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 9.5e-12 75.1 152 41.4
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 9.5e-12 75.1 97 49.5
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.2e-11 74.7 82 59.8
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.2e-11 74.7 219 34.2
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.2e-11 74.7 97 49.5
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.1e-11 73.9 97 49.5
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.1e-11 73.9 70 61.4
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.8e-11 73.6 125 45.6
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.8e-11 73.6 97 49.5
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.8e-11 73.6 132 41.7
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.6e-11 73.2 95 52.6
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.7e-11 72.8 80 57.5
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 6.2e-11 72.4 76 60.5
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.1e-11 72.0 135 42.2
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-10 71.6 135 44.4
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.8e-10 70.9 206 35.4
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.8e-10 70.9 82 56.1
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.8e-10 70.9 62 67.7
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 2.4e-10 70.5 82 56.1
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.4e-10 70.5 149 36.9
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 3.1e-10 70.1 127 44.9
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 3.1e-10 70.1 133 42.9
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 3.1e-10 70.1 131 41.2
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 3.1e-10 70.1 70 61.4
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 4.0e-10 69.7 184 35.3
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 5.2e-10 69.3 230 31.7
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 6.8e-10 68.9 130 42.3
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 6.8e-10 68.9 70 60.0
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.8e-10 68.9 155 38.7
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.9e-10 68.6 82 54.9
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 8.9e-10 68.6 70 60.0
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.2e-09 68.2 164 36.6
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.5e-09 67.8 130 40.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-09 67.8 301 29.6
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.5e-09 67.8 76 57.9
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.0e-09 67.4 119 42.9
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.6e-09 67.0 344 27.0
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 2.6e-09 67.0 70 57.1
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 3.4e-09 66.6 152 35.5
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 4.4e-09 66.2 62 64.5
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 5.8e-09 65.9 207 31.9
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 5.8e-09 65.9 97 43.3
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 9.9e-09 65.1 48 83.3
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 9.9e-09 65.1 187 34.2
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.7e-08 64.3 70 55.7
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.7e-08 64.3 97 43.3
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 2.2e-08 63.9 82 50.0
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.8e-08 63.2 89 48.3
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.8e-08 63.2 97 43.3
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 4.9e-08 62.8 141 39.0
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 4.9e-08 62.8 157 37.6
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.4e-08 62.4 89 47.2
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.4e-08 62.4 89 48.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 6.4e-08 62.4 70 54.3
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.1e-07 61.6 153 37.9
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 1.4e-07 61.2 85 45.9
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 1.4e-07 61.2 182 34.6
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.9e-07 60.8 207 32.9
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.9e-07 60.8 313 27.5
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.4e-07 60.5 187 32.1
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 2.4e-07 60.5 154 37.0
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.2e-07 60.1 86 43.0
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 5.4e-07 59.3 53 62.3
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 7.1e-07 58.9 151 37.1
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.6e-06 56.2 84 45.2
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.0e-06 55.8 146 34.9
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 7.8e-06 55.5 130 36.2


User provided reference genes

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