Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-96 356.3 186 100.0
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-65 253.8 188 77.1
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 3.8e-65 251.9 172 83.1
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.2e-56 222.2 190 69.5
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 9.7e-53 210.7 187 66.3
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 9.7e-53 210.7 109 99.1
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.9e-50 201.4 193 65.3
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 6.1e-47 191.4 196 63.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 3.9e-46 188.7 192 62.5
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 3.9e-46 188.7 192 62.5
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-45 187.2 192 62.5
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.1e-45 187.2 192 62.5
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 8.2e-44 181.0 197 62.4
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.6e-42 176.8 192 59.4
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.2e-38 161.8 192 55.7
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-37 160.2 192 55.7
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-36 155.6 192 55.2
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-33 146.7 192 52.6
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.2e-33 146.4 210 52.9
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 5.0e-33 145.2 193 52.3
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.6e-31 140.2 203 50.7
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 2.7e-31 139.4 192 51.6
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 8.0e-31 137.9 123 64.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.8e-30 136.7 196 50.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 2.3e-30 136.3 200 50.5
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 2.3e-30 136.3 200 50.5
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 7.5e-29 131.3 99 71.7
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.1e-27 127.5 190 50.0
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 8.6e-25 117.9 64 93.8
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 8.6e-25 117.9 80 78.8
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.6e-23 112.5 186 45.7
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 4.7e-23 112.1 201 45.3
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 4.7e-23 112.1 211 44.5
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 6.1e-23 111.7 202 47.0
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 8.0e-23 111.3 198 46.0
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-22 109.8 198 45.5
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-22 109.8 202 47.0
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.3e-22 109.8 202 47.0
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 5.2e-22 108.6 202 47.0
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.2e-21 107.5 198 44.9
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.7e-20 103.6 212 43.4
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.7e-20 103.6 199 46.2
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.1e-19 100.9 197 43.7
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.4e-19 100.5 147 51.0
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.8e-19 100.1 210 43.3
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.4e-19 99.8 201 44.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 2.4e-19 99.8 212 42.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 3.1e-19 99.4 210 44.3
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 5.4e-19 98.6 187 45.5
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 2.0e-18 96.7 210 39.5
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.0e-18 96.7 202 43.1
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 4.5e-18 95.5 208 42.3
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.8e-18 94.7 196 44.4
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 7.8e-18 94.7 198 42.4
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.0e-17 94.4 209 41.1
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.0e-17 94.4 209 41.1
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.0e-17 94.4 212 39.6
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.9e-17 92.8 189 45.5
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 5.0e-17 92.0 201 42.3
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 8.6e-17 91.3 208 40.9
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.1e-16 90.9 210 41.9
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.1e-16 90.9 209 41.6
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.9e-16 90.1 209 42.6
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.9e-16 90.1 212 39.6
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 4.3e-16 89.0 212 38.7
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.3e-16 89.0 217 39.6
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 7.3e-16 88.2 215 40.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 9.5e-16 87.8 213 41.3
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 9.5e-16 87.8 197 43.7
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.1e-15 86.7 224 38.4
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 2.8e-15 86.3 211 39.8
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 3.6e-15 85.9 211 39.3
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 6.1e-15 85.1 202 41.1
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.0e-15 84.7 211 40.3
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 8.0e-15 84.7 210 38.6
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 8.0e-15 84.7 217 39.6
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.3e-14 83.2 210 40.0
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.1e-14 82.8 210 40.5
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 3.1e-14 82.8 211 37.9
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 4.0e-14 82.4 68 67.6
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.0e-14 82.4 210 40.5
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 4.0e-14 82.4 203 39.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.0e-14 82.4 204 39.7
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.2e-14 82.0 219 40.2
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.9e-14 81.3 199 41.7
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 2.0e-13 80.1 126 43.7
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.6e-13 79.7 187 38.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.6e-13 79.7 211 37.0
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.6e-13 79.7 199 38.7
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 4.4e-13 79.0 112 49.1
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 5.8e-13 78.6 210 36.7
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 7.5e-13 78.2 210 40.0
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 9.8e-13 77.8 206 37.9
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 9.8e-13 77.8 221 37.6
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 9.8e-13 77.8 207 37.7
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.3e-12 77.4 206 40.8
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 2.2e-12 76.6 212 39.2
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 2.9e-12 76.3 199 40.2
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 4.9e-12 75.5 126 44.4
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.9e-12 75.5 205 35.1
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 6.4e-12 75.1 217 36.9
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 6.4e-12 75.1 237 35.0
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 8.3e-12 74.7 204 42.6
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.1e-11 74.3 222 34.7
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.1e-11 74.3 206 34.5
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.4e-11 73.9 135 40.7
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.9e-11 73.6 203 35.5
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.9e-11 73.6 216 38.4
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.1e-11 72.4 196 39.3
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 5.4e-11 72.0 93 49.5
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.0e-11 71.6 221 36.2
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 7.0e-11 71.6 203 37.4
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.2e-11 71.2 222 39.6
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.2e-10 70.9 217 35.5
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.6e-10 70.5 200 39.5
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.6e-10 70.5 120 45.8
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.0e-10 70.1 213 35.2
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-10 69.7 222 39.2
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 3.5e-10 69.3 210 33.8
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 7.8e-10 68.2 219 35.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.0e-09 67.8 222 38.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.7e-09 67.0 188 38.3
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.3e-09 66.6 170 40.6
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.3e-09 66.6 223 34.5
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 3.9e-09 65.9 93 51.6
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 3.9e-09 65.9 191 35.1
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.0e-09 65.5 114 43.9
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 8.6e-09 64.7 206 37.9
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.5e-08 63.9 111 45.0
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.9e-08 63.5 204 32.8
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 3.3e-08 62.8 207 38.2
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 5.6e-08 62.0 174 36.2
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 7.3e-08 61.6 202 35.6
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 9.5e-08 61.2 209 36.8
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 2.1e-07 60.1 194 34.0
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.1e-07 60.1 183 36.6
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.1e-07 60.1 177 36.2
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.6e-07 59.3 200 32.5
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.7e-07 58.9 134 39.6
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.7e-07 58.9 217 32.7
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.7e-07 58.9 198 34.3
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 4.7e-07 58.9 86 46.5
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 8.0e-07 58.2 111 40.5
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.1e-06 57.8 208 35.1
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.4e-06 57.4 186 36.6
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.8e-06 57.0 204 32.8
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 4.0e-06 55.8 62 50.0
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 5.2e-06 55.5 213 31.0
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 5.2e-06 55.5 177 35.0
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 6.8e-06 55.1 178 32.0


User provided reference genes

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