Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 0.0e+00 1207.2 604 100.0
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 0.0e+00 1202.2 604 99.7
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 0.0e+00 1202.2 604 99.7
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 0.0e+00 1157.9 606 95.9
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 0.0e+00 1151.3 607 95.7
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 0.0e+00 1090.9 605 91.1
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 4.7e-298 1027.3 605 86.0
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.7e-292 1008.8 604 82.9
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 8.8e-289 996.5 606 82.3
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.8e-257 892.5 599 74.3
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 7.4e-235 817.4 478 87.0
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.8e-233 812.8 605 67.4
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 2.2e-218 762.7 478 81.0
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.1e-177 627.5 604 55.3
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 9.1e-177 624.4 604 55.1
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 1.2e-176 624.0 612 55.2
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 5.7e-171 605.1 614 53.1
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.4e-169 600.5 604 53.6
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.1e-169 599.4 607 53.4
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 3.5e-168 595.9 605 52.9
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 5.6e-166 588.6 607 54.2
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 7.3e-166 588.2 607 53.2
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 9.5e-166 587.8 607 51.6
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.8e-164 583.6 624 50.5
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 5.8e-163 578.6 617 50.7
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 4.1e-161 572.4 605 51.2
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.9e-158 563.5 607 52.1
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 3.4e-155 552.7 606 50.8
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 3.4e-155 552.7 582 52.7
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.4e-155 552.4 607 50.6
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 2.7e-152 543.1 614 49.7
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 7.8e-152 541.6 606 50.2
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 3.9e-151 539.3 608 50.3
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 2.5e-150 536.6 609 49.3
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.2e-149 534.3 653 47.6
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 6.2e-149 531.9 612 49.7
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 1.1e-148 531.2 617 49.4
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 2.3e-148 530.0 624 48.1
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 1.5e-147 527.3 605 49.8
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 2.6e-147 526.6 608 50.0
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 6.4e-146 521.9 523 54.5
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.9e-145 520.4 620 46.9
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 5.4e-145 518.8 613 49.3
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 2.3e-143 513.5 636 45.8
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 1.1e-142 511.1 612 47.9
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.9e-142 510.4 568 48.6
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 4.3e-142 509.2 625 47.4
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 1.2e-141 507.7 622 46.8
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 6.2e-141 505.4 632 46.5
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 8.1e-141 505.0 612 48.5
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 3.1e-140 503.1 612 48.2
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 3.1e-140 503.1 619 46.4
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 4.0e-140 502.7 623 46.9
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 8.9e-140 501.5 610 47.7
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 1.2e-139 501.1 685 46.1
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.5e-139 500.7 623 46.9
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 9.9e-139 498.0 612 46.9
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 6.4e-138 495.4 619 45.9
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 4.2e-137 492.7 623 45.7
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 9.2e-137 491.5 618 46.1
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 5.1e-135 485.7 622 46.9
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 6.6e-135 485.3 629 45.3
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 8.7e-135 485.0 620 45.6
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.1e-134 484.6 625 45.4
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.5e-134 484.2 625 45.4
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 1.1e-132 478.0 626 43.8
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 1.1e-132 478.0 483 55.7
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 4.0e-132 476.1 655 43.1
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 2.6e-131 473.4 627 45.1
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 1.7e-130 470.7 714 39.9
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 3.8e-130 469.5 646 44.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 7.1e-129 465.3 638 43.9
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.9e-126 457.2 605 43.1
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 3.8e-122 443.0 271 83.0
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 2.0e-115 420.6 616 41.4
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 7.4e-110 402.1 608 40.5
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.4e-108 397.9 603 41.8
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 7.9e-104 382.1 657 40.2
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 7.7e-99 365.5 396 52.8
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 6.1e-96 355.9 472 45.1
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 2.0e-91 340.9 368 50.5
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 3.4e-91 340.1 408 48.8
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.9e-87 326.6 393 48.9
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.1e-84 318.5 329 54.4
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.6e-75 288.1 287 51.9
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 2.0e-75 287.7 279 56.6
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.0e-74 285.4 318 52.2
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.6e-72 278.1 321 51.4
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 2.6e-62 244.2 279 52.0
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 1.3e-50 205.3 226 53.1
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 1.5e-49 201.8 234 46.2
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 9.5e-49 199.1 336 38.7
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 2.8e-48 197.6 226 50.4
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 3.1e-47 194.1 614 26.1
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 2.0e-43 181.4 609 28.4
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.1e-39 169.1 101 82.2
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 7.5e-38 162.9 273 40.3
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 9.8e-38 162.5 265 40.0
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 8.3e-37 159.5 407 33.7
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.1e-32 144.8 284 31.0
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 1.8e-31 141.7 427 29.3
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.0e-26 125.9 119 50.4
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 5.1e-26 123.6 139 54.7
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.5e-25 122.1 114 50.0
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 5.6e-25 120.2 130 42.3
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 2.1e-24 118.2 246 34.1
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 6.2e-24 116.7 139 49.6
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 8.1e-24 116.3 567 24.9
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 1.1e-23 115.9 152 44.7
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.1e-23 115.9 160 36.2
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 3.1e-23 114.4 132 40.2
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 2.0e-22 111.7 140 48.6
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 4.2e-20 104.0 147 46.3
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.6e-19 102.1 125 50.4
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 1.5e-17 95.5 137 40.9
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 4.8e-16 90.5 380 28.9
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 6.9e-15 86.7 124 43.5
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 1.6e-11 75.5 426 24.9
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 6.0e-11 73.6 101 46.5
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 5.6e-09 67.0 95 45.3
CDE09G0654 Ceratophyllum demersum HOM05D006061 ORTHO05D007450 6.9e-07 60.1 77 36.4


User provided reference genes

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