Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 1.2e-29 132.5 68 100.0
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 3.6e-29 131.0 68 98.5
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 3.6e-29 131.0 68 98.5
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 1.8e-25 118.6 68 92.6
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 4.1e-25 117.5 68 91.2
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 1.3e-23 112.5 71 84.5
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 7.2e-22 106.7 59 91.5
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 2.3e-20 101.7 68 75.0
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 3.4e-19 97.8 68 76.5
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 3.4e-19 97.8 67 77.6
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 4.4e-19 97.4 72 79.2
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 5.7e-19 97.1 68 76.5
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 4.8e-18 94.0 60 78.3
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 6.3e-18 93.6 68 73.5
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 1.4e-17 92.4 60 76.7
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 1.4e-17 92.4 60 76.7
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 2.4e-17 91.7 68 70.6
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 2.9e-15 84.7 64 68.8
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 2.9e-15 84.7 64 68.8
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 7.2e-14 80.1 68 69.1
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 7.2e-14 80.1 48 81.2
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 9.4e-14 79.7 64 64.1
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 2.7e-13 78.2 63 66.7
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 6.1e-13 77.0 63 65.1
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 1.8e-12 75.5 63 65.1
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 4.0e-12 74.3 46 73.9
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 4.0e-12 74.3 50 74.0
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 5.2e-12 73.9 63 63.5
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 5.2e-12 73.9 63 61.9
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 5.2e-12 73.9 46 73.9
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 8.8e-12 73.2 46 80.4
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 8.8e-12 73.2 62 67.7
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 8.8e-12 73.2 47 76.6
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 1.2e-11 72.8 59 64.4
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 1.5e-11 72.4 59 61.0
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 2.0e-11 72.0 39 87.2
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 2.0e-11 72.0 58 65.5
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 3.4e-11 71.2 44 79.5
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 4.4e-11 70.9 39 87.2
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 4.4e-11 70.9 48 75.0
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 4.4e-11 70.9 46 71.7
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 4.4e-11 70.9 46 71.7
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 5.7e-11 70.5 76 56.6
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 5.7e-11 70.5 44 77.3
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 7.5e-11 70.1 61 60.7
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 9.8e-11 69.7 66 53.0
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 9.8e-11 69.7 63 60.3
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 1.3e-10 69.3 57 68.4
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 1.3e-10 69.3 42 81.0
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 1.7e-10 68.9 44 75.0
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 1.7e-10 68.9 46 69.6
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 2.2e-10 68.6 63 60.3
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 2.8e-10 68.2 61 59.0
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 2.8e-10 68.2 62 61.3
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 3.7e-10 67.8 39 82.1
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 3.7e-10 67.8 45 75.6
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 3.7e-10 67.8 62 64.5
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 3.7e-10 67.8 61 60.7
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 3.7e-10 67.8 60 66.7
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 4.8e-10 67.4 44 75.0
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 4.8e-10 67.4 65 55.4
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 4.8e-10 67.4 45 73.3
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 6.3e-10 67.0 68 57.4
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 6.3e-10 67.0 44 75.0
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 6.3e-10 67.0 44 75.0
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 6.3e-10 67.0 44 75.0
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 6.3e-10 67.0 39 79.5
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 8.3e-10 66.6 38 76.3
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.1e-09 66.2 63 60.3
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.1e-09 66.2 63 60.3
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.4e-09 65.9 44 75.0
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 1.4e-09 65.9 38 81.6
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 2.4e-09 65.1 38 76.3
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 2.4e-09 65.1 55 61.8
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 4.1e-09 64.3 35 88.6
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 4.1e-09 64.3 35 88.6
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 5.4e-09 63.9 39 79.5
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 5.4e-09 63.9 39 71.8
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 9.1e-09 63.2 37 78.4
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 1.6e-08 62.4 46 60.9
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 1.6e-08 62.4 62 56.5
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 1.6e-08 62.4 41 75.6
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 1.6e-08 62.4 41 75.6
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 2.0e-08 62.0 39 76.9
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 2.0e-08 62.0 44 75.0
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 2.7e-08 61.6 71 49.3
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 2.7e-08 61.6 57 57.9
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 4.5e-08 60.8 46 71.7
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 4.5e-08 60.8 44 68.2
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 4.5e-08 60.8 45 64.4
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 7.7e-08 60.1 57 57.9
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 1.3e-07 59.3 39 74.4
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 2.3e-07 58.5 57 54.4
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 8.6e-07 56.6 38 71.1
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 2.5e-06 55.1 37 64.9


User provided reference genes

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