Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00520 Brassica napus HOM05D006747 ORTHO05D008384 5.5e-145 517.7 274 100.0
BcaC06g36739 Brassica carinata HOM05D006747 ORTHO05D008384 4.5e-139 498.0 278 97.1
BolC7t40498H Brassica oleracea HOM05D006747 ORTHO05D008384 1.1e-137 493.4 279 96.8
BraA07t27816Z Brassica rapa HOM05D006747 ORTHO05D008384 1.3e-130 469.9 277 92.4
Thhalv10002060m.g Eutrema salsugineum HOM05D006747 ORTHO05D008384 4.1e-124 448.4 286 81.1
BcaB03g16845 Brassica carinata HOM05D006747 ORTHO05D008384 5.3e-124 448.0 277 86.3
Sp3g33710 Schrenkiella parvula HOM05D006747 ORTHO05D008384 1.0e-122 443.7 286 85.0
Carub.0003s3494 Capsella rubella HOM05D006747 ORTHO05D008384 1.3e-122 443.4 285 79.6
AL3G53500 Arabidopsis lyrata HOM05D006747 ORTHO05D008384 1.7e-122 443.0 278 84.9
CARHR111050 Cardamine hirsuta HOM05D006747 ORTHO05D008384 1.2e-120 436.8 284 83.5
AT2G20495 Arabidopsis thaliana HOM05D006747 ORTHO05D008384 7.4e-118 427.6 284 81.3
A07p00240 Brassica napus HOM05D006747 ORTHO05D008384 5.7e-110 401.4 277 83.4
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 9.7e-110 400.6 277 75.8
THA.LOC104804045 Tarenaya hassleriana HOM05D006747 ORTHO05D008384 1.2e-102 377.1 257 75.5
Atru.chr5.1716 Acer truncatum HOM05D006747 ORTHO05D008384 8.3e-101 370.9 242 75.2
Cfa002442 Carpinus fangiana HOM05D006747 ORTHO05D008384 1.0e-98 364.0 242 72.3
Gorai.007G147500 Gossypium raimondii HOM05D006747 ORTHO05D008384 3.8e-98 362.1 239 74.5
Gohir.D11G137550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 1.5e-97 360.1 239 74.1
Lj5g0027576 Lotus japonicus HOM05D006747 ORTHO05D008384 3.2e-97 359.0 239 73.6
Ciclev10021655m.g Citrus clementina HOM05D006747 ORTHO05D008384 5.5e-97 358.2 239 72.4
Dinv22393 Davidia involucrata HOM05D006747 ORTHO05D008384 7.2e-97 357.8 242 71.1
Gohir.A11G131500 Gossypium hirsutum HOM05D006747 ORTHO05D008384 9.5e-97 357.5 239 74.1
GSVIVG01028355001 Vitis vinifera HOM05D006747 ORTHO05D008384 1.6e-96 356.7 242 72.7
Duzib138G0743 Durio zibethinus HOM05D006747 ORTHO05D008384 1.8e-95 353.2 239 71.5
Thecc.01G256100 Theobroma cacao HOM05D006747 ORTHO05D008384 4.0e-95 352.1 239 72.0
Haze_24648 Corylus avellana HOM05D006747 ORTHO05D008384 8.8e-95 350.9 273 65.2
Sabra05G0174300 Salix brachista HOM05D006747 ORTHO05D008384 8.8e-95 350.9 242 72.7
arahy.Tifrunner.gnm1.ann1.EQ4JVG Arachis hypogaea HOM05D006747 ORTHO05D008384 1.5e-94 350.1 239 71.1
Eucgr.B01566 Eucalyptus grandis HOM05D006747 ORTHO05D008384 1.5e-94 350.1 238 71.0
Glyma.06G315300 Glycine max HOM05D006747 ORTHO05D008384 2.0e-94 349.7 247 71.3
Potri.005G225900 Populus trichocarpa HOM05D006747 ORTHO05D008384 2.0e-94 349.7 242 72.3
Phvul.007G192000 Phaseolus vulgaris HOM05D006747 ORTHO05D008384 2.6e-94 349.4 240 71.2
arahy.Tifrunner.gnm1.ann1.0525TE Arachis hypogaea HOM05D006747 ORTHO05D008384 4.4e-94 348.6 239 71.1
TPR.G35130 Trifolium pratense HOM05D006747 ORTHO05D008384 5.7e-94 348.2 239 70.7
Psat6g054040 Pisum sativum HOM05D006747 ORTHO05D008384 1.7e-93 346.7 239 69.9
VMungo0720G1324 Vigna mungo HOM05D006747 ORTHO05D008384 2.2e-93 346.3 239 69.9
COL.COLO4_04026 Corchorus olitorius HOM05D006747 ORTHO05D008384 3.1e-92 342.4 272 64.0
Peaxi162Scf00987g00036 Petunia axillaris HOM05D006747 ORTHO05D008384 3.1e-92 342.4 243 67.9
MD05G1195200 Malus domestica HOM05D006747 ORTHO05D008384 4.1e-92 342.0 242 67.8
FAN20G2892 Fragaria x ananassa HOM05D006747 ORTHO05D008384 7.0e-92 341.3 243 69.1
Lalb_Chr06g0170541 Lupinus albus HOM05D006747 ORTHO05D008384 7.0e-92 341.3 239 69.9
RcHm_v2.0_Chr6g0287851 Rosa chinensis HOM05D006747 ORTHO05D008384 7.0e-92 341.3 254 68.1
CSS0000886 Camellia sinensis var. sinensis HOM05D006747 ORTHO05D008384 1.2e-91 340.5 230 72.2
Rhsim13G0036000 Rhododendron simsii HOM05D006747 ORTHO05D008384 1.2e-91 340.5 237 71.3
TAR362G0605 Trochodendron aralioides HOM05D006747 ORTHO05D008384 1.6e-91 340.1 242 69.4
FAN27G0389 Fragaria x ananassa HOM05D006747 ORTHO05D008384 2.0e-91 339.7 243 69.1
PSO063G2179 Papaver somniferum HOM05D006747 ORTHO05D008384 2.0e-91 339.7 249 66.7
Medtr1g069790 Medicago truncatula HOM05D006747 ORTHO05D008384 2.7e-91 339.3 239 67.8
Lsat_1_v5_gn_5_182940 Lactuca sativa HOM05D006747 ORTHO05D008384 5.9e-91 338.2 242 67.8
CsaV3_7G027040 Cucumis sativus L. HOM05D006747 ORTHO05D008384 2.3e-90 336.3 248 66.9
FAN15G1911 Fragaria x ananassa HOM05D006747 ORTHO05D008384 2.3e-90 336.3 243 68.3
Cc01_g18210 Coffea canephora HOM05D006747 ORTHO05D008384 2.9e-90 335.9 239 69.0
Solyc06g008350.3 Solanum lycopersicum HOM05D006747 ORTHO05D008384 5.0e-90 335.1 242 67.8
Sopen06g003200 Solanum pennellii HOM05D006747 ORTHO05D008384 5.0e-90 335.1 242 67.8
CiPaw.03G265900 Carya illinoinensis HOM05D006747 ORTHO05D008384 8.6e-90 334.3 264 63.6
PGSC0003DMG400025504 Solanum tuberosum HOM05D006747 ORTHO05D008384 8.6e-90 334.3 242 67.8
Aqoxy2G03665 Aquilegia oxysepala HOM05D006747 ORTHO05D008384 1.5e-89 333.6 245 65.7
HanXRQChr09g0254271 Helianthus annuus HOM05D006747 ORTHO05D008384 1.9e-89 333.2 235 71.9
DCAR_012556 Daucus carota HOM05D006747 ORTHO05D008384 2.5e-89 332.8 243 67.5
Actinidia30159 Actinidia chinensis HOM05D006747 ORTHO05D008384 7.3e-89 331.3 242 66.1
EL10As5g23483 Beta vulgaris HOM05D006747 ORTHO05D008384 7.3e-89 331.3 244 66.0
MELO3C012750.2 Cucumis melo HOM05D006747 ORTHO05D008384 1.6e-88 330.1 240 67.1
CANSAT01G1212 Cannabis sativa HOM05D006747 ORTHO05D008384 3.6e-88 328.9 236 66.5
Migut.D00438 Erythranthe guttata HOM05D006747 ORTHO05D008384 6.1e-88 328.2 237 65.4
PGR031G3840 Punica granatum HOM05D006747 ORTHO05D008384 1.8e-87 326.6 222 70.7
Manes.12G033600 Manihot esculenta HOM05D006747 ORTHO05D008384 2.3e-87 326.2 227 69.6
MSTRG.21486 Avicennia marina HOM05D006747 ORTHO05D008384 4.0e-87 325.5 249 65.9
SalBow4G0984 Salvia bowleyana HOM05D006747 ORTHO05D008384 4.0e-87 325.5 273 58.6
vmacro02672 Vaccinium macrocarpon HOM05D006747 ORTHO05D008384 5.7e-86 321.6 288 59.4
AUR62011854 Chenopodium quinoa HOM05D006747 ORTHO05D008384 9.8e-86 320.9 227 67.4
Os07g0458800 Oryza sativa ssp. japonica HOM05D006747 ORTHO05D008384 2.9e-85 319.3 239 65.7
ATR0736G001 Amborella trichopoda HOM05D006747 ORTHO05D008384 3.7e-85 318.9 238 64.7
MBI07_g16913_MAGBIO Magnolia biondii HOM05D006747 ORTHO05D008384 4.9e-85 318.5 234 65.4
SGA_v2.0_scaffold138G35213 Striga asiatica HOM05D006747 ORTHO05D008384 6.4e-85 318.2 257 61.1
CDE06G1525 Ceratophyllum demersum HOM05D006747 ORTHO05D008384 9.5e-81 304.3 239 61.5
unitig_8.g3882 Utricularia gibba HOM05D006747 ORTHO05D008384 1.6e-80 303.5 244 62.7
Zm00001eb384950 Zea mays HOM05D006747 ORTHO05D008384 8.0e-80 301.2 241 61.0
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.1e-79 300.8 213 68.5
Prupe.8G221800 Prunus persica HOM05D006747 ORTHO05D008384 1.1e-79 300.8 243 63.8
Sc17g0000600 Simmondsia chinensis HOM05D006747 ORTHO05D008384 1.4e-79 300.4 210 68.6
AUR62024699 Chenopodium quinoa HOM05D006747 ORTHO05D008384 2.3e-79 299.7 211 66.4
FAN24G2059 Fragaria x ananassa HOM05D006747 ORTHO05D008384 3.7e-77 292.4 243 62.1
CAN.G941.16 Capsicum annuum HOM05D006747 ORTHO05D008384 5.4e-76 288.5 210 66.7
HPP92_014756 Vanilla planifolia HOM05D006747 ORTHO05D008384 6.0e-75 285.0 213 64.8
ECA248G1486 Erigeron canadensis HOM05D006747 ORTHO05D008384 3.3e-73 279.3 242 61.2
Nn1g02801 Nelumbo nucifera HOM05D006747 ORTHO05D008384 1.6e-72 276.9 242 59.9
Hma1.2p1_0273F.1_g109550 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 2.1e-72 276.6 189 70.9
ClCG09G008030 Citrullus lanatus HOM05D006747 ORTHO05D008384 2.0e-70 270.0 417 40.5
PSO017G5775 Papaver somniferum HOM05D006747 ORTHO05D008384 1.7e-69 266.9 249 57.4
AagrBONN_evm.TU.Sc2ySwM_228.388 Anthoceros agrestis HOM05D006747 ORTHO05D008384 1.2e-67 260.8 233 55.4
Pp3c11_10320 Physcomitrium patens HOM05D006747 ORTHO05D008384 2.7e-67 259.6 232 53.9
Oeu035736.1 Olea europaea HOM05D006747 ORTHO05D008384 4.0e-63 245.7 175 64.6
Mapoly0024s0028 Marchantia polymorpha HOM05D006747 ORTHO05D008384 3.4e-62 242.7 232 53.4
Nitab4.5_0005593g0070 Nicotiana tabacum HOM05D006747 ORTHO05D008384 5.4e-60 235.3 211 57.3
Nitab4.5_0000326g0130 Nicotiana tabacum HOM05D006747 ORTHO05D008384 1.5e-57 227.3 243 53.1
HPP92_028089 Vanilla planifolia HOM05D006747 ORTHO05D008384 5.6e-57 225.3 170 62.4
QL09p039580 Quercus lobata HOM05D006747 ORTHO05D008384 2.4e-55 219.9 160 68.1
SMO115G0001 Selaginella moellendorffii HOM05D006747 ORTHO05D008384 2.6e-54 216.5 227 50.2
Sed0026822 Sechium edule HOM05D006747 ORTHO05D008384 8.4e-53 211.5 161 64.0
Ca_09674_v3 Cicer arietinum L. HOM05D006747 ORTHO05D008384 1.6e-43 180.6 128 67.2
FvH4_2g21270 Fragaria vesca HOM05D006747 ORTHO05D008384 1.3e-42 177.6 131 66.4
QL09p039572 Quercus lobata HOM05D006747 ORTHO05D008384 1.8e-31 140.6 90 73.3
SEGI_35883 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 2.5e-25 120.2 89 64.0
Hma1.2p1_0273F.1_g109560 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 1.0e-21 108.2 73 69.9
SEGI_30594 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 1.9e-20 104.0 96 47.9
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 1.0e-18 98.2 73 60.3
arahy.Tifrunner.gnm1.ann1.K1LLW7 Arachis hypogaea HOM05D006747 ORTHO05D008384 8.8e-18 95.1 57 78.9
MD10G1182200 Malus domestica HOM05D006747 ORTHO05D008384 1.4e-15 87.8 70 65.7
Cpa.g.sc165.14 Carica papaya HOM05D006747 ORTHO05D008384 1.5e-14 84.3 54 77.8
Actinidia34415 Actinidia chinensis HOM05D006747 ORTHO05D008384 7.2e-12 75.5 56 53.6
Actinidia34401 Actinidia chinensis HOM05D006747 ORTHO05D008384 6.1e-11 72.4 53 54.7
Gohir.A07G213740 Gossypium hirsutum HOM05D006747 ORTHO05D008384 7.9e-11 72.0 153 32.7
SEGI_37670 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 1.4e-10 71.2 52 59.6
Duzib133G0415 Durio zibethinus HOM05D006747 ORTHO05D008384 5.3e-07 59.3 49 61.2


User provided reference genes

Program Settings