Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00320 Brassica napus HOM05D003247 ORTHO05D032812 2.8e-109 398.7 207 100.0
BolC7t40481H Brassica oleracea HOM05D003247 ORTHO05D032812 3.1e-60 235.7 122 98.4
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 2.7e-59 232.6 151 82.1
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 2.7e-59 232.6 151 82.1
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 1.7e-58 229.9 151 81.5
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 3.8e-58 228.8 151 80.8
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 1.5e-57 226.9 151 79.5
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 1.5e-57 226.9 151 79.5
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 2.5e-57 226.1 151 79.5
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 2.5e-57 226.1 151 79.5
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 2.5e-57 226.1 151 78.8
CARHR047420 Cardamine hirsuta HOM05D003247 ORTHO05D003974 5.5e-57 224.9 151 78.1
BcaC06g36754 Brassica carinata HOM05D003247 ORTHO05D032812 1.2e-56 223.8 142 84.5
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 1.6e-56 223.4 151 78.1
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 1.6e-56 223.4 151 78.1
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 2.1e-56 223.0 151 78.1
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 7.0e-52 208.0 151 70.9
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 1.3e-50 203.8 142 76.1
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.3e-50 203.8 151 69.5
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 3.8e-50 202.2 151 69.5
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 1.5e-49 200.3 156 66.7
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 3.3e-49 199.1 156 67.3
Gohir.D03G150200 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.6e-48 196.8 156 66.0
Gohir.A03G018700 Gossypium hirsutum HOM05D003247 ORTHO05D003974 3.6e-48 195.7 156 65.4
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 6.1e-48 194.9 156 64.7
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 6.1e-48 194.9 156 64.7
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 8.0e-48 194.5 156 66.7
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 1.0e-47 194.1 156 64.7
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.4e-47 193.7 156 64.7
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 1.8e-47 193.4 155 64.5
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.3e-47 193.0 156 63.5
Prupe.5G103000 Prunus persica HOM05D003247 ORTHO05D003974 2.3e-47 193.0 156 62.8
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 2.3e-47 193.0 156 64.1
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 3.0e-47 192.6 156 64.7
GSVIVG01019731001 Vitis vinifera HOM05D003247 ORTHO05D003974 3.0e-47 192.6 159 62.9
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 4.0e-47 192.2 156 65.4
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 4.0e-47 192.2 160 63.8
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.0e-47 192.2 156 63.5
CiPaw.11G133400 Carya illinoinensis HOM05D003247 ORTHO05D003974 6.8e-47 191.4 156 62.8
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 6.8e-47 191.4 156 65.4
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.2e-46 190.7 156 63.5
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 1.2e-46 190.7 156 62.2
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 2.0e-46 189.9 155 62.6
Sc01g0005540 Simmondsia chinensis HOM05D003247 ORTHO05D003974 2.0e-46 189.9 156 62.8
Cc08_g14910 Coffea canephora HOM05D003247 ORTHO05D003974 5.7e-46 188.3 160 61.2
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 7.5e-46 188.0 156 62.2
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.7e-45 186.8 159 59.1
CAN.G774.61 Capsicum annuum HOM05D003247 ORTHO05D003974 2.2e-45 186.4 156 62.2
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 2.2e-45 186.4 156 61.5
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 2.2e-45 186.4 159 59.7
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 2.2e-45 186.4 156 62.2
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 2.2e-45 186.4 156 62.2
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 2.8e-45 186.0 159 59.1
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 2.8e-45 186.0 159 59.1
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 3.7e-45 185.7 154 63.6
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 4.9e-45 185.3 156 61.5
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 4.9e-45 185.3 163 59.5
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 4.9e-45 185.3 159 60.4
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 6.3e-45 184.9 156 59.6
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 6.3e-45 184.9 156 61.5
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 8.3e-45 184.5 156 58.3
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 8.3e-45 184.5 156 59.6
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 8.3e-45 184.5 156 61.5
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 1.1e-44 184.1 156 61.5
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 1.1e-44 184.1 158 63.9
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 1.1e-44 184.1 160 61.2
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 1.4e-44 183.7 156 60.9
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.4e-44 183.7 158 60.1
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 2.4e-44 183.0 160 58.8
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.4e-44 183.0 156 60.3
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 3.1e-44 182.6 156 59.0
Lalb_Chr09g0332971 Lupinus albus HOM05D003247 ORTHO05D003974 3.1e-44 182.6 156 59.6
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 4.1e-44 182.2 156 59.6
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 4.1e-44 182.2 156 60.3
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 5.4e-44 181.8 159 58.5
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 7.0e-44 181.4 156 58.3
CsaV3_5G002690 Cucumis sativus L. HOM05D003247 ORTHO05D003974 9.2e-44 181.0 156 63.5
DCAR_008373 Daucus carota HOM05D003247 ORTHO05D003974 9.2e-44 181.0 156 59.6
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 9.2e-44 181.0 155 60.0
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 9.2e-44 181.0 162 59.3
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 1.6e-43 180.3 156 59.0
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.6e-43 180.3 156 60.3
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 2.0e-43 179.9 156 59.0
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.7e-43 179.5 156 59.0
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.7e-43 179.5 156 59.0
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 3.5e-43 179.1 156 58.3
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 5.9e-43 178.3 156 56.4
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 5.9e-43 178.3 156 59.0
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 5.9e-43 178.3 168 55.4
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 5.9e-43 178.3 156 59.6
CDE08G1495 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.0e-42 177.6 156 59.0
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 1.7e-42 176.8 156 59.0
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.7e-42 176.8 156 59.0
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 2.3e-42 176.4 156 59.6
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 2.9e-42 176.0 155 57.4
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 2.9e-42 176.0 157 59.2
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 3.8e-42 175.6 156 58.3
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 3.8e-42 175.6 168 56.0
Phvul.002G290904 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 8.6e-42 174.5 159 57.2
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 8.6e-42 174.5 155 60.0
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 8.6e-42 174.5 159 57.2
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 1.5e-41 173.7 158 56.3
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.9e-41 173.3 156 55.8
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.9e-41 173.3 156 55.8
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.9e-41 173.3 154 59.1
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 2.5e-41 172.9 159 54.7
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 2.5e-41 172.9 155 57.4
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 2.5e-41 172.9 156 57.7
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 2.5e-41 172.9 156 57.7
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 3.3e-41 172.6 156 57.1
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 3.3e-41 172.6 156 57.7
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 3.3e-41 172.6 156 57.1
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 4.3e-41 172.2 156 57.1
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 4.3e-41 172.2 156 56.4
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 1.2e-40 170.6 155 57.4
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 2.1e-40 169.9 156 55.8
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 2.1e-40 169.9 156 54.5
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 2.1e-40 169.9 158 55.7
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.1e-40 169.9 163 54.6
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 2.8e-40 169.5 163 56.4
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 6.1e-40 168.3 160 57.5
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 8.0e-40 167.9 156 56.4
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 8.0e-40 167.9 156 56.4
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 2.3e-39 166.4 155 56.8
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 3.0e-39 166.0 155 56.8
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 5.2e-39 165.2 158 55.7
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 6.8e-39 164.9 158 53.2
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 1.7e-37 160.2 156 52.6
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 3.3e-33 146.0 156 51.3
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.8e-31 140.2 162 48.8
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 2.3e-31 139.8 155 49.0
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.0e-30 136.7 156 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 7.5e-30 134.8 163 44.8
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.7e-29 133.7 163 47.2
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 8.3e-29 131.3 164 46.3
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.4e-28 130.6 156 44.9
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 3.9e-26 122.5 92 73.9
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 3.9e-26 122.5 92 73.9
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 1.9e-25 120.2 151 52.3
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.1e-24 116.7 142 45.8
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.8e-24 116.3 142 45.8
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 4.7e-24 115.5 157 43.9
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 6.2e-24 115.2 142 45.8
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.8e-23 113.6 142 45.1
Gorai.004G213400 Gossypium raimondii HOM05D003247 ORTHO05D003974 5.2e-23 112.1 109 54.1
Medtr8g098545 Medicago truncatula HOM05D003247 ORTHO05D003974 1.2e-22 110.9 152 43.4
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 4.1e-20 102.4 153 41.8
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 7.1e-20 101.7 143 38.5
C07p00300 Brassica napus HOM05D003247 ORTHO05D042289 6.0e-19 98.6 58 86.2
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 6.0e-19 98.6 159 37.1
BolC7t40479H Brassica oleracea HOM05D003247 ORTHO05D042289 2.3e-18 96.7 58 84.5
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 9.5e-17 91.3 116 44.0
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 4.9e-13 79.0 122 39.3
Lalb_Chr16g0390071 Lupinus albus HOM05D003247 ORTHO05D003974 1.1e-09 67.8 46 65.2
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 1.9e-09 67.0 131 39.7
Cre04.g213250 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 5.6e-09 65.5 48 66.7
Lalb_Chr16g0390081 Lupinus albus HOM05D003247 ORTHO05D003974 9.6e-09 64.7 61 57.4


User provided reference genes

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