Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00300 Brassica napus HOM05D003247 ORTHO05D042289 9.9e-112 406.8 200 100.0
BolC7t40479H Brassica oleracea HOM05D003247 ORTHO05D042289 1.4e-105 386.3 202 95.0
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 1.6e-21 107.1 81 72.8
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 1.6e-21 107.1 81 72.8
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 1.6e-21 107.1 81 72.8
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 8.1e-21 104.8 81 71.6
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 8.1e-21 104.8 81 71.6
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 1.4e-20 104.0 81 71.6
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 1.4e-20 104.0 81 71.6
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 1.4e-20 104.0 81 71.6
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 1.4e-20 104.0 81 71.6
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 1.4e-20 104.0 81 71.6
CARHR047420 Cardamine hirsuta HOM05D003247 ORTHO05D003974 1.8e-20 103.6 81 70.4
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 3.1e-20 102.8 81 70.4
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 3.1e-20 102.8 81 70.4
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 4.0e-20 102.4 63 87.3
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 3.4e-19 99.4 81 66.7
C07p00320 Brassica napus HOM05D003247 ORTHO05D032812 4.4e-19 99.0 58 86.2
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.9e-18 96.3 103 54.4
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 4.9e-18 95.5 56 87.5
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.4e-17 94.0 110 50.9
Gohir.A03G018700 Gossypium hirsutum HOM05D003247 ORTHO05D003974 4.1e-17 92.4 105 52.4
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 5.4e-17 92.0 83 60.2
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 7.1e-17 91.7 105 49.5
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 7.1e-17 91.7 105 52.4
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 9.2e-17 91.3 105 48.6
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 9.2e-17 91.3 105 48.6
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 1.2e-16 90.9 110 49.1
Gohir.D03G150200 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.6e-16 90.5 105 51.4
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 2.1e-16 90.1 105 51.4
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 3.5e-16 89.4 106 50.9
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 3.5e-16 89.4 108 50.9
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 3.5e-16 89.4 105 50.5
CiPaw.11G133400 Carya illinoinensis HOM05D003247 ORTHO05D003974 4.6e-16 89.0 105 48.6
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 4.6e-16 89.0 105 50.5
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 7.8e-16 88.2 105 50.5
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 1.0e-15 87.8 105 50.5
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.3e-15 87.4 105 50.5
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 1.3e-15 87.4 105 50.5
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.3e-15 87.4 105 49.5
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.3e-15 86.7 100 51.0
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 3.0e-15 86.3 105 49.5
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 3.0e-15 86.3 105 49.5
Lalb_Chr09g0332971 Lupinus albus HOM05D003247 ORTHO05D003974 3.9e-15 85.9 105 49.5
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 5.1e-15 85.5 99 53.5
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 5.1e-15 85.5 105 48.6
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 6.6e-15 85.1 97 53.6
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 6.6e-15 85.1 105 51.4
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 6.6e-15 85.1 105 48.6
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 8.6e-15 84.7 105 51.4
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 8.6e-15 84.7 97 52.6
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 1.1e-14 84.3 105 49.5
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.1e-14 84.3 87 57.5
Phvul.002G290904 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 1.1e-14 84.3 105 49.5
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 1.5e-14 84.0 105 48.6
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 1.5e-14 84.0 105 48.6
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 1.9e-14 83.6 107 45.8
CAN.G774.61 Capsicum annuum HOM05D003247 ORTHO05D003974 1.9e-14 83.6 99 50.5
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 1.9e-14 83.6 105 47.6
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 2.5e-14 83.2 86 51.2
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 2.5e-14 83.2 86 53.5
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 2.5e-14 83.2 99 48.5
Cc08_g14910 Coffea canephora HOM05D003247 ORTHO05D003974 3.3e-14 82.8 83 57.8
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 3.3e-14 82.8 107 46.7
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 4.3e-14 82.4 105 45.7
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 4.3e-14 82.4 105 47.6
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 4.3e-14 82.4 86 53.5
Sc01g0005540 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.3e-14 82.4 105 46.7
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.3e-14 82.4 105 46.7
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 5.6e-14 82.0 99 48.5
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 5.6e-14 82.0 80 56.2
GSVIVG01019731001 Vitis vinifera HOM05D003247 ORTHO05D003974 7.3e-14 81.6 107 43.9
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.6e-13 80.5 105 46.7
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 1.6e-13 80.5 68 58.8
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 2.1e-13 80.1 105 44.8
CDE08G1495 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 2.1e-13 80.1 73 54.8
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.1e-13 80.1 87 55.2
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 2.1e-13 80.1 86 52.3
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 2.1e-13 80.1 99 49.5
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 2.8e-13 79.7 89 47.2
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 3.6e-13 79.3 105 43.8
Lalb_Chr16g0390081 Lupinus albus HOM05D003247 ORTHO05D003974 3.6e-13 79.3 87 54.0
Prupe.5G103000 Prunus persica HOM05D003247 ORTHO05D003974 3.6e-13 79.3 105 43.8
DCAR_008373 Daucus carota HOM05D003247 ORTHO05D003974 4.7e-13 79.0 68 64.7
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 4.7e-13 79.0 105 44.8
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 4.7e-13 79.0 99 49.5
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 6.2e-13 78.6 88 51.1
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 6.2e-13 78.6 105 44.8
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 8.1e-13 78.2 83 54.2
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.1e-12 77.8 68 61.8
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 1.4e-12 77.4 105 43.8
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 1.4e-12 77.4 86 50.0
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 1.4e-12 77.4 105 42.9
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.4e-12 77.4 81 55.6
Gorai.004G213400 Gossypium raimondii HOM05D003247 ORTHO05D003974 1.4e-12 77.4 62 62.9
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 1.8e-12 77.0 86 46.5
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.8e-12 77.0 105 44.8
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.8e-12 77.0 105 44.8
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 2.4e-12 76.6 86 48.8
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 2.4e-12 76.6 86 48.8
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.4e-12 76.6 80 50.0
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 3.1e-12 76.3 68 58.8
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 4.0e-12 75.9 104 42.3
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 4.0e-12 75.9 89 49.4
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 4.0e-12 75.9 81 51.9
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 5.2e-12 75.5 80 52.5
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 6.8e-12 75.1 107 44.9
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 8.9e-12 74.7 81 51.9
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 8.9e-12 74.7 81 51.9
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 8.9e-12 74.7 105 41.9
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 1.2e-11 74.3 105 43.8
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 1.2e-11 74.3 87 54.0
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 1.2e-11 74.3 62 58.1
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.5e-11 73.9 104 42.3
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 1.5e-11 73.9 64 57.8
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.5e-11 73.9 62 61.3
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 1.5e-11 73.9 70 58.6
CsaV3_5G002690 Cucumis sativus L. HOM05D003247 ORTHO05D003974 2.0e-11 73.6 70 55.7
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 2.0e-11 73.6 81 53.1
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 2.0e-11 73.6 75 54.7
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 2.6e-11 73.2 105 42.9
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 2.6e-11 73.2 46 73.9
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 4.4e-11 72.4 62 59.7
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 5.8e-11 72.0 105 43.8
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 7.6e-11 71.6 86 45.3
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 7.6e-11 71.6 86 45.3
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.7e-10 70.5 61 59.0
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 2.9e-10 69.7 81 48.1
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 2.9e-10 69.7 105 41.9
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 3.8e-10 69.3 105 40.0
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 4.9e-10 68.9 62 54.8
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 1.4e-09 67.4 81 45.7
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 5.4e-09 65.5 62 56.5
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.2e-08 64.3 81 45.7
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 4.6e-08 62.4 66 50.0
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 7.8e-08 61.6 57 52.6
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 1.3e-07 60.8 80 46.2
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.9e-06 57.0 65 49.2
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.9e-06 57.0 49 51.0
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.9e-06 57.0 49 51.0
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.6e-06 55.5 49 51.0
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.6e-06 55.5 49 51.0
HanXRQChr07g0190431 Helianthus annuus HOM05D003247 ORTHO05D003974 7.3e-06 55.1 36 72.2
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 9.6e-06 54.7 81 42.0


User provided reference genes

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