Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-124 449.1 224 100.0
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.7e-83 313.2 161 96.9
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.9e-59 232.6 152 80.3
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 4.4e-52 208.8 119 84.0
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 4.4e-52 208.8 119 84.0
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 4.4e-52 208.8 119 84.0
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 4.4e-52 208.8 119 84.0
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 4.4e-52 208.8 119 84.0
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 4.4e-52 208.8 119 84.0
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.7e-51 206.8 119 83.2
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 2.2e-51 206.5 119 82.4
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 3.8e-51 205.7 119 82.4
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-51 205.7 119 82.4
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 8.4e-51 204.5 119 81.5
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 8.4e-51 204.5 119 81.5
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.1e-50 204.1 119 81.5
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 1.1e-50 204.1 119 81.5
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.4e-50 203.8 119 80.7
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-50 203.4 119 82.4
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.2e-49 200.7 119 79.0
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-49 200.7 119 79.8
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.2e-49 200.7 119 79.0
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 3.5e-49 199.1 119 78.2
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 3.5e-49 199.1 119 79.0
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.0e-49 198.4 119 77.3
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.3e-48 196.4 119 77.3
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.3e-48 196.4 119 77.3
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.3e-48 196.4 119 79.0
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 3.0e-48 196.1 119 79.0
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 3.0e-48 196.1 119 77.3
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.0e-48 196.1 119 77.3
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.0e-48 196.1 119 76.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 3.9e-48 195.7 119 77.3
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.9e-48 195.7 119 76.5
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.9e-48 195.7 119 76.5
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 5.1e-48 195.3 119 76.5
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 5.1e-48 195.3 119 78.2
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 5.1e-48 195.3 119 76.5
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 5.1e-48 195.3 119 77.3
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 5.1e-48 195.3 119 77.3
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 6.6e-48 194.9 119 78.2
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 8.7e-48 194.5 119 76.5
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 8.7e-48 194.5 119 77.3
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 8.7e-48 194.5 119 76.5
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 8.7e-48 194.5 119 76.5
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.1e-47 194.1 119 76.5
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.1e-47 194.1 119 76.5
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.5e-47 193.7 119 75.6
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.5e-47 193.7 119 75.6
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.5e-47 193.7 119 75.6
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.5e-47 193.7 118 77.1
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.9e-47 193.4 119 77.3
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.9e-47 193.4 119 77.3
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.9e-47 193.4 119 76.5
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.9e-47 193.4 119 74.8
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 2.5e-47 193.0 119 75.6
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.5e-47 193.0 119 75.6
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 2.5e-47 193.0 119 75.6
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.3e-47 192.6 119 74.8
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 3.3e-47 192.6 119 75.6
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 3.3e-47 192.6 119 76.5
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.3e-47 192.2 119 75.6
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 4.3e-47 192.2 119 77.3
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 4.3e-47 192.2 119 76.5
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 4.3e-47 192.2 119 75.6
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 5.6e-47 191.8 119 75.6
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 5.6e-47 191.8 119 75.6
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 5.6e-47 191.8 119 77.3
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.6e-47 191.8 119 76.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 5.6e-47 191.8 119 75.6
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.6e-47 191.8 146 66.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.3e-47 191.4 119 75.6
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 7.3e-47 191.4 119 76.5
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 7.3e-47 191.4 119 75.6
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 9.6e-47 191.0 119 77.3
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 9.6e-47 191.0 119 75.6
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 9.6e-47 191.0 119 75.6
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.3e-46 190.7 119 75.6
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.3e-46 190.7 119 75.6
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.3e-46 190.7 119 75.6
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.3e-46 190.7 119 75.6
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.6e-46 190.3 119 75.6
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.6e-46 190.3 119 75.6
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.6e-46 190.3 119 75.6
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 2.1e-46 189.9 119 75.6
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.1e-46 189.9 119 72.3
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 2.1e-46 189.9 119 73.1
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.1e-46 189.9 119 74.8
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.8e-46 189.5 116 76.7
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.8e-46 189.5 119 74.8
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 2.8e-46 189.5 119 74.8
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.6e-46 189.1 119 73.1
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.8e-46 188.7 119 74.8
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.2e-46 188.3 119 73.1
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 6.2e-46 188.3 119 75.6
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.2e-46 188.3 119 74.8
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 8.1e-46 188.0 119 73.1
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 8.1e-46 188.0 118 77.1
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.1e-45 187.6 119 76.5
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.1e-45 187.6 119 76.5
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.4e-45 187.2 118 74.6
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.4e-45 187.2 119 74.8
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.8e-45 186.8 119 74.8
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.4e-45 186.4 117 75.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.4e-45 186.4 119 74.8
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.4e-45 186.4 119 74.8
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.4e-45 186.4 119 73.9
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 2.4e-45 186.4 119 74.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 2.4e-45 186.4 119 73.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 2.4e-45 186.4 116 75.9
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 4.0e-45 185.7 119 73.9
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 73.1
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 73.1
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 74.8
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 74.8
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 74.8
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 74.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 75.6
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 5.3e-45 185.3 119 71.4
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 9.0e-45 184.5 119 72.3
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 9.0e-45 184.5 119 74.8
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.2e-44 184.1 119 73.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.5e-44 183.7 119 73.9
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.0e-44 183.3 119 72.3
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 3.4e-44 182.6 119 71.4
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 5.8e-44 181.8 119 71.4
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.9e-44 181.0 119 69.7
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-43 180.6 119 72.3
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 2.2e-43 179.9 119 70.6
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 6.4e-43 178.3 119 69.7
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.1e-42 177.6 119 69.7
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 9.3e-42 174.5 119 73.1
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.6e-41 172.2 146 63.0
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 4.6e-41 172.2 105 79.0
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 7.9e-41 171.4 119 66.4
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.9e-39 166.8 105 73.3
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-38 164.1 122 68.0
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 6.2e-38 161.8 106 74.5
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 1.4e-37 160.6 105 72.4
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 9.9e-36 154.5 119 58.0
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.2e-35 153.3 119 63.9
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 8.4e-35 151.4 120 55.8
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 8.4e-35 151.4 120 59.2
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-34 151.0 162 53.1
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 7.1e-34 148.3 119 63.9
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.6e-33 147.1 97 73.2
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.5e-33 146.0 139 53.2
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 1.5e-31 140.6 119 61.3
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 4.5e-28 129.0 119 58.0
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 2.7e-25 119.8 88 69.3
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-21 107.1 66 80.3
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.8e-21 107.1 66 80.3
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 9.0e-21 104.8 65 73.8
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 6.5e-19 98.6 72 66.7
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.9e-15 87.0 125 44.0
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-13 81.3 48 72.9
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 2.4e-13 80.1 70 52.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 6.1e-09 65.5 58 60.3
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 6.1e-09 65.5 119 34.5
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 7.4e-07 58.5 53 60.4
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 7.4e-07 58.5 34 76.5


User provided reference genes

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