Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00120 Brassica napus HOM05D000641 ORTHO05D008820 3.4e-212 741.5 397 100.0
BolC7t40463H Brassica oleracea HOM05D000641 ORTHO05D008820 1.6e-190 669.5 538 73.0
BraA07t27788Z Brassica rapa HOM05D000641 ORTHO05D008820 1.3e-184 649.8 457 81.2
BcaC06g36770 Brassica carinata HOM05D000641 ORTHO05D008820 2.5e-175 619.0 512 71.7
AL3G53930 Arabidopsis lyrata HOM05D000641 ORTHO05D008820 5.7e-111 405.2 496 58.9
Thhalv10002328m.g Eutrema salsugineum HOM05D000641 ORTHO05D008820 7.7e-108 394.8 511 57.3
AT2G20815 Arabidopsis thaliana HOM05D000641 ORTHO05D008820 2.3e-107 393.3 496 57.3
Carub.0003s3539 Capsella rubella HOM05D000641 ORTHO05D008820 1.2e-105 387.5 492 56.9
Aa31LG8G17680 Aethionema arabicum HOM05D000186 ORTHO05D002091 3.9e-99 365.9 516 53.5
CARHR046100 Cardamine hirsuta HOM05D000641 ORTHO05D008820 6.4e-94 348.6 478 53.6
CARHR111500 Cardamine hirsuta HOM05D000641 ORTHO05D008820 2.1e-84 317.0 365 61.9
TWI36G0041 Tripterygium wilfordii HOM05D000641 ORTHO05D008820 1.8e-35 154.5 391 35.3
Dinv23702 Davidia involucrata HOM05D000641 ORTHO05D008820 5.1e-35 152.9 388 35.6
Atru.chr6.3062 Acer truncatum HOM05D000641 ORTHO05D008820 8.7e-35 152.1 291 42.3
FAN14G1122 Fragaria x ananassa HOM05D000641 ORTHO05D008820 4.3e-34 149.8 394 33.2
Gorai.008G152100 Gossypium raimondii HOM05D000641 ORTHO05D008820 1.6e-33 147.9 391 35.8
Sabra13G0117900 Salix brachista HOM05D000641 ORTHO05D008820 1.6e-33 147.9 385 34.0
Eucgr.A01785 Eucalyptus grandis HOM05D000641 ORTHO05D008820 3.7e-33 146.7 450 32.2
arahy.Tifrunner.gnm1.ann1.ATG8WK Arachis hypogaea HOM05D000641 ORTHO05D008820 6.3e-33 146.0 426 32.4
Thecc.02G172500 Theobroma cacao HOM05D000641 ORTHO05D008820 6.3e-33 146.0 389 33.7
TAR624G1068 Trochodendron aralioides HOM05D000641 ORTHO05D008820 8.2e-33 145.6 454 31.1
RcHm_v2.0_Chr2g0161991 Rosa chinensis HOM05D000641 ORTHO05D008820 1.4e-32 144.8 357 34.7
Ciclev10017570m.g Citrus clementina HOM05D000641 ORTHO05D008820 3.1e-32 143.7 387 33.3
Gohir.A12G136800 Gossypium hirsutum HOM05D000641 ORTHO05D008820 5.3e-32 142.9 394 35.0
PGR042G3402 Punica granatum HOM05D000641 ORTHO05D008820 5.3e-32 142.9 386 33.2
arahy.Tifrunner.gnm1.ann1.RA1C4M Arachis hypogaea HOM05D000641 ORTHO05D008820 1.2e-31 141.7 426 31.9
Potri.013G146100 Populus trichocarpa HOM05D000641 ORTHO05D008820 1.5e-31 141.4 272 38.6
Cpa.g.sc34.106 Carica papaya HOM05D000641 ORTHO05D008820 3.4e-31 140.2 384 33.3
CiPaw.04G123000 Carya illinoinensis HOM05D000641 ORTHO05D008820 7.7e-31 139.0 378 33.3
MD17G1083000 Malus domestica HOM05D000641 ORTHO05D008820 1.7e-30 137.9 380 34.2
Duzib248G0813 Durio zibethinus HOM05D000641 ORTHO05D008820 2.9e-30 137.1 415 33.3
MD09G1092900 Malus domestica HOM05D000641 ORTHO05D008820 2.9e-30 137.1 401 32.7
Prupe.3G232200 Prunus persica HOM05D000641 ORTHO05D008820 3.8e-30 136.7 395 32.4
Manes.05G121400 Manihot esculenta HOM05D000641 ORTHO05D008820 1.4e-29 134.8 288 37.5
Cfa014550 Carpinus fangiana HOM05D000641 ORTHO05D008820 2.5e-29 134.0 451 31.5
GSVIVG01030582001 Vitis vinifera HOM05D000641 ORTHO05D008820 2.5e-29 134.0 379 33.2
TPR.G27112 Trifolium pratense HOM05D000641 ORTHO05D008820 4.2e-29 133.3 416 30.8
Nitab4.5_0003018g0010 Nicotiana tabacum HOM05D000641 ORTHO05D008820 7.2e-29 132.5 372 32.5
FAN05G1593 Fragaria x ananassa HOM05D000641 ORTHO05D008820 1.6e-28 131.3 471 30.6
QL08p037487 Quercus lobata HOM05D000641 ORTHO05D008820 1.6e-28 131.3 386 32.1
CANSAT64G1209 Cannabis sativa HOM05D000641 ORTHO05D008820 7.9e-28 129.0 422 32.0
MBI02_g35905_MAGBIO Magnolia biondii HOM05D000641 ORTHO05D008820 7.9e-28 129.0 501 29.9
PSO541G2384 Papaver somniferum HOM05D000641 ORTHO05D008820 1.0e-27 128.6 396 32.8
Lalb_Chr14g0366661 Lupinus albus HOM05D000641 ORTHO05D008820 1.4e-27 128.3 359 31.8
Oeu032188.1 Olea europaea HOM05D000641 ORTHO05D008820 3.9e-27 126.7 283 36.4
Ca_01534_v3 Cicer arietinum L. HOM05D000641 ORTHO05D008820 5.1e-27 126.3 426 29.6
Medtr2g090050 Medicago truncatula HOM05D000641 ORTHO05D008820 6.7e-27 125.9 370 30.8
arahy.Tifrunner.gnm1.ann1.92XMB3 Arachis hypogaea HOM05D000641 ORTHO05D008820 2.5e-26 124.0 283 37.1
Lj3g0000685 Lotus japonicus HOM05D000641 ORTHO05D008820 9.7e-26 122.1 448 28.6
FAN02G0524 Fragaria x ananassa HOM05D000641 ORTHO05D008820 2.2e-25 120.9 280 35.0
ClCG02G017370 Citrullus lanatus HOM05D000641 ORTHO05D008820 6.3e-25 119.4 385 32.5
Sed0008278 Sechium edule HOM05D000641 ORTHO05D008820 1.4e-24 118.2 480 29.4
Solyc07g054390.1 Solanum lycopersicum HOM05D000641 ORTHO05D008820 1.4e-24 118.2 351 30.8
Glyma.13G300600 Glycine max HOM05D000641 ORTHO05D008820 3.1e-24 117.1 477 27.7
CAN.G248.59 Capsicum annuum HOM05D000641 ORTHO05D008820 5.3e-24 116.3 395 28.6
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 9.1e-24 115.5 279 33.3
Nitab4.5_0001090g0030 Nicotiana tabacum HOM05D000641 ORTHO05D008820 1.2e-23 115.2 360 30.8
Glyma.06G298000 Glycine max HOM05D000641 ORTHO05D008820 4.5e-23 113.2 517 29.0
Aqoxy1G02752 Aquilegia oxysepala HOM05D000641 ORTHO05D008820 7.7e-23 112.5 388 30.4
Peaxi162Scf00132g00729 Petunia axillaris HOM05D000641 ORTHO05D008820 1.7e-22 111.3 293 31.4
Phvul.005G107400 Phaseolus vulgaris HOM05D000641 ORTHO05D008820 1.7e-22 111.3 381 29.7
Glyma.12G107200 Glycine max HOM05D000641 ORTHO05D008820 3.8e-22 110.2 498 27.9
Sed0017549 Sechium edule HOM05D000641 ORTHO05D008820 3.8e-22 110.2 488 29.9
Actinidia39298 Actinidia chinensis HOM05D000641 ORTHO05D008820 5.0e-22 109.8 382 31.7
Oeu005830.1 Olea europaea HOM05D000641 ORTHO05D008820 6.5e-22 109.4 314 31.5
Gohir.D12G140801 Gossypium hirsutum HOM05D000492 ORTHO05D000499 8.5e-22 109.0 351 32.8
Lj3g0004709 Lotus japonicus HOM05D000641 ORTHO05D008820 1.1e-21 108.6 259 34.4
Rhsim04G0065600 Rhododendron simsii HOM05D000641 ORTHO05D008820 3.2e-21 107.1 454 28.6
PGSC0003DMG400018319 Solanum tuberosum HOM05D000641 ORTHO05D008820 4.2e-21 106.7 429 28.2
Lj2g0015341 Lotus japonicus HOM05D000641 ORTHO05D008820 5.5e-21 106.3 389 29.6
DCAR_012985 Daucus carota HOM05D000641 ORTHO05D008820 7.2e-21 105.9 480 27.7
VMungo1127G0566 Vigna mungo HOM05D000641 ORTHO05D008820 1.2e-20 105.1 511 27.2
Nitab4.5_0000146g0120 Nicotiana tabacum HOM05D000641 ORTHO05D008820 1.6e-20 104.8 204 35.8
MELO3C013532.2 Cucumis melo HOM05D000641 ORTHO05D008820 3.6e-20 103.6 274 36.1
arahy.Tifrunner.gnm1.ann1.4122HZ Arachis hypogaea HOM05D000641 ORTHO05D008820 6.1e-20 102.8 172 41.3
PSO675G1637 Papaver somniferum HOM05D000641 ORTHO05D008820 7.9e-20 102.4 278 34.9
THA.LOC109117133 Tarenaya hassleriana HOM05D000641 ORTHO05D008820 7.9e-20 102.4 264 39.8
Psat5g270000 Pisum sativum HOM05D000641 ORTHO05D008820 1.8e-19 101.3 295 29.2
VMungo1080G0966 Vigna mungo HOM05D001969 ORTHO05D003463 3.9e-19 100.1 311 32.5
Phvul.011G112000 Phaseolus vulgaris HOM05D000641 ORTHO05D008820 6.7e-19 99.4 436 27.8
Cc05_g06430 Coffea canephora HOM05D000641 ORTHO05D008820 8.8e-19 99.0 368 29.9
Nn1g03917 Nelumbo nucifera HOM05D000641 ORTHO05D008820 2.6e-18 97.4 453 28.7
Migut.H01022 Erythranthe guttata HOM05D000641 ORTHO05D008820 3.3e-18 97.1 375 27.5
Lsat_1_v5_gn_4_70320 Lactuca sativa HOM05D000641 ORTHO05D008820 3.3e-18 97.1 365 29.0
CsaV3_6G012470 Cucumis sativus L. HOM05D000641 ORTHO05D008820 5.7e-18 96.3 442 29.4
Lsat_1_v5_gn_3_39221 Lactuca sativa HOM05D000492 ORTHO05D008820 1.3e-17 95.1 258 33.7
HanXRQChr17g0542491 Helianthus annuus HOM05D000641 ORTHO05D008820 6.3e-17 92.8 382 28.3
VMungo1127G1518 Vigna mungo HOM05D000641 ORTHO05D008820 8.2e-17 92.4 304 27.6
Sc21g0002450 Simmondsia chinensis HOM05D000641 ORTHO05D008820 5.3e-16 89.7 353 28.3
SalBow1G7770 Salvia bowleyana HOM05D000641 ORTHO05D008820 2.0e-15 87.8 331 29.6
AT2G20616 Arabidopsis thaliana HOM05D000641 ORTHO05D008820 2.6e-15 87.4 121 49.6
Sp3g34040 Schrenkiella parvula HOM05D000641 ORTHO05D008820 4.5e-15 86.7 52 84.6
Actinidia30485 Actinidia chinensis HOM05D000641 ORTHO05D008820 2.2e-14 84.3 163 39.9
ECA246G0759 Erigeron canadensis HOM05D000492 ORTHO05D008820 8.5e-14 82.4 418 28.0
MBI05_g33211_MAGBIO Magnolia biondii HOM05D000641 ORTHO05D008820 1.1e-13 82.0 194 33.0
SGA_v2.0_scaffold159G37628 Striga asiatica HOM05D000641 ORTHO05D008820 1.1e-13 82.0 370 27.6
Dinv15478 Davidia involucrata HOM05D000492 ORTHO05D008820 1.2e-12 78.6 406 28.6
ECA234G0295 Erigeron canadensis HOM05D000492 ORTHO05D000499 1.6e-12 78.2 376 27.4
Haze_13095 Corylus avellana HOM05D000641 ORTHO05D008820 3.6e-12 77.0 371 27.2
Glyma.12G107401 Glycine max HOM05D000641 ORTHO05D008820 5.2e-11 73.2 312 26.6
QL09p005284 Quercus lobata HOM05D000641 ORTHO05D009503 1.7e-09 68.2 230 31.7
Peaxi162Scf00167g00069 Petunia axillaris HOM05D000641 ORTHO05D009503 2.2e-09 67.8 254 29.9
Psat5g228240 Pisum sativum HOM05D000641 ORTHO05D009503 2.8e-09 67.4 201 29.4
Potri.001G126000 Populus trichocarpa HOM05D000641 ORTHO05D009503 3.7e-09 67.0 178 34.3
Actinidia24993 Actinidia chinensis HOM05D000641 ORTHO05D009503 6.3e-09 66.2 184 32.1
Manes.06G133400 Manihot esculenta HOM05D000641 ORTHO05D009503 8.2e-09 65.9 258 29.8
Sabra01G0097000 Salix brachista HOM05D000641 ORTHO05D009503 8.2e-09 65.9 167 34.1
Zm00001eb049060 Zea mays HOM05D000641 ORTHO05D008820 1.1e-08 65.5 203 30.0
Nitab4.5_0003647g0030 Nicotiana tabacum HOM05D000641 ORTHO05D009503 1.4e-08 65.1 174 34.5
Dinv06573 Davidia involucrata HOM05D000641 ORTHO05D009503 1.8e-08 64.7 182 31.9
MD01G1181900 Malus domestica HOM05D000641 ORTHO05D009503 2.4e-08 64.3 146 35.6
Phvul.005G008600 Phaseolus vulgaris HOM05D000641 ORTHO05D009503 2.4e-08 64.3 274 30.3
ClCG09G013070 Citrullus lanatus HOM05D000641 ORTHO05D009503 5.3e-08 63.2 151 30.5
SEGI_38472 Sequoiadendron giganteum HOM05D000641 ORTHO05D000944 5.3e-08 63.2 276 27.9
TPR.G12185 Trifolium pratense HOM05D000641 ORTHO05D009503 7.0e-08 62.8 212 29.2
TAR375G0077 Trochodendron aralioides HOM05D000641 ORTHO05D009503 7.0e-08 62.8 158 35.4
Ciclev10006535m.g Citrus clementina HOM05D000641 ORTHO05D009503 9.1e-08 62.4 141 30.5
arahy.Tifrunner.gnm1.ann1.TAG6ZD Arachis hypogaea HOM05D000641 ORTHO05D009503 1.2e-07 62.0 211 27.5
BcaC06g32833 Brassica carinata HOM05D000641 ORTHO05D009503 1.2e-07 62.0 180 32.2
Cpa.g.sc13.292 Carica papaya HOM05D000641 ORTHO05D009503 1.6e-07 61.6 269 29.0
Prupe.2G275600 Prunus persica HOM05D000641 ORTHO05D009503 1.6e-07 61.6 143 35.7
SGA_v2.0_scaffold2G01221 Striga asiatica HOM05D000641 ORTHO05D009503 1.6e-07 61.6 153 32.0
C07p54090 Brassica napus HOM05D000641 ORTHO05D009503 2.0e-07 61.2 240 29.6
ECA232G0602 Erigeron canadensis HOM05D000641 ORTHO05D009503 2.0e-07 61.2 143 34.3
Cfa008148 Carpinus fangiana HOM05D000641 ORTHO05D009503 2.6e-07 60.8 205 27.8
Gorai.001G049400 Gossypium raimondii HOM05D000641 ORTHO05D009503 3.5e-07 60.5 248 30.2
Lsat_1_v5_gn_9_51881 Lactuca sativa HOM05D000641 ORTHO05D009503 3.5e-07 60.5 146 32.9
Sed0005950 Sechium edule HOM05D000641 ORTHO05D009503 3.5e-07 60.5 138 31.2
VMungo1080G1510 Vigna mungo HOM05D000641 ORTHO05D009503 3.5e-07 60.5 283 30.0
Gohir.D07G046200 Gossypium hirsutum HOM05D000641 ORTHO05D009503 4.5e-07 60.1 215 32.6
RcHm_v2.0_Chr1g0374111 Rosa chinensis HOM05D000641 ORTHO05D009503 4.5e-07 60.1 140 32.9
Thecc.03G153400 Theobroma cacao HOM05D000641 ORTHO05D009503 4.5e-07 60.1 235 30.6
Lalb_Chr18g0048911 Lupinus albus HOM05D000641 ORTHO05D009503 5.9e-07 59.7 159 30.8
HPP92_027427 Vanilla planifolia HOM05D000641 ORTHO05D009503 5.9e-07 59.7 139 33.8
ATR1039G001 Amborella trichopoda HOM05D026922 ORTHO05D008820 7.7e-07 59.3 214 30.8
Aa31LG7G10390 Aethionema arabicum HOM05D000641 ORTHO05D009503 1.0e-06 58.9 188 30.9
Eucgr.K00166 Eucalyptus grandis HOM05D000641 ORTHO05D009503 1.0e-06 58.9 187 28.9
TWI39G0625 Tripterygium wilfordii HOM05D000641 ORTHO05D009503 1.0e-06 58.9 214 31.3
A03p55810 Brassica napus HOM05D000641 ORTHO05D009503 1.3e-06 58.5 209 29.2
BolC7t45895H Brassica oleracea HOM05D000641 ORTHO05D009503 1.3e-06 58.5 210 29.0
Haze_13894 Corylus avellana HOM05D000641 ORTHO05D009503 2.2e-06 57.8 200 28.5
Duzib068G1481 Durio zibethinus HOM05D000641 ORTHO05D009503 2.2e-06 57.8 166 34.3
AUR62002222 Chenopodium quinoa HOM05D003096 ORTHO05D003521 2.9e-06 57.4 139 31.7
AUR62015434 Chenopodium quinoa HOM05D000641 ORTHO05D009503 2.9e-06 57.4 139 31.7
Gohir.A07G042000 Gossypium hirsutum HOM05D000641 ORTHO05D009503 2.9e-06 57.4 248 30.2
MBI15_g27188_MAGBIO Magnolia biondii HOM05D000641 ORTHO05D000944 2.9e-06 57.4 271 26.2
BraA03t14649Z Brassica rapa HOM05D000641 ORTHO05D009503 3.8e-06 57.0 251 27.1
FAN06G1376 Fragaria x ananassa HOM05D000641 ORTHO05D009503 3.8e-06 57.0 247 27.5
Sopen05g030110 Solanum pennellii HOM05D000641 ORTHO05D009503 3.8e-06 57.0 146 36.3
HanXRQChr16g0512821 Helianthus annuus HOM05D000641 ORTHO05D009503 5.0e-06 56.6 145 35.2
Nitab4.5_0000146g0110 Nicotiana tabacum HOM05D000641 ORTHO05D008820 5.0e-06 56.6 72 40.3
Oeu021704.1 Olea europaea HOM05D000641 ORTHO05D009503 5.0e-06 56.6 176 31.8
C01p20610 Brassica napus HOM05D000641 ORTHO05D009503 6.5e-06 56.2 195 28.7
MBI05_g42458_MAGBIO Magnolia biondii HOM05D000641 ORTHO05D008820 6.5e-06 56.2 397 26.2
HPP92_017629 Vanilla planifolia HOM05D000641 ORTHO05D008820 6.5e-06 56.2 302 26.8
Atru.chr1.747 Acer truncatum HOM05D000641 ORTHO05D009503 8.5e-06 55.8 143 33.6
ECA236G2399 Erigeron canadensis HOM05D000641 ORTHO05D000944 8.5e-06 55.8 79 41.8
FAN10G0113 Fragaria x ananassa HOM05D000641 ORTHO05D009503 8.5e-06 55.8 207 28.5
MD07G1252100 Malus domestica HOM05D000641 ORTHO05D009503 8.5e-06 55.8 176 32.4


User provided reference genes

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