Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 4.3e-50 201.1 103 100.0
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.4e-45 185.3 93 100.0
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 3.7e-38 161.4 80 100.0
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 3.7e-38 161.4 80 100.0
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 8.3e-38 160.2 87 93.1
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 3.5e-36 154.8 80 96.2
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 3.5e-36 154.8 80 96.2
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 6.0e-36 154.1 77 98.7
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 6.0e-36 154.1 77 98.7
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 6.0e-36 154.1 77 98.7
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 6.0e-36 154.1 77 98.7
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 6.0e-36 154.1 77 98.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 3.0e-35 151.8 77 97.4
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 5.1e-35 151.0 81 88.9
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 8.6e-35 150.2 79 92.4
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.1e-34 149.8 79 92.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.9e-34 149.1 79 91.1
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.9e-34 149.1 77 96.1
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 2.5e-34 148.7 80 91.2
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.5e-34 148.7 80 91.2
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 4.3e-34 147.9 79 92.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 4.3e-34 147.9 80 90.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 4.3e-34 147.9 79 91.1
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.3e-34 147.9 80 92.5
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.6e-34 147.5 80 90.0
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 5.6e-34 147.5 80 90.0
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 5.6e-34 147.5 82 87.8
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 5.6e-34 147.5 80 87.5
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 5.6e-34 147.5 80 90.0
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 7.3e-34 147.1 77 90.9
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 7.3e-34 147.1 101 75.2
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 7.3e-34 147.1 77 90.9
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 9.5e-34 146.7 79 88.6
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 9.5e-34 146.7 82 87.8
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 9.5e-34 146.7 82 87.8
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 9.5e-34 146.7 82 87.8
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 9.5e-34 146.7 79 92.4
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 9.5e-34 146.7 79 88.6
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.2e-33 146.4 80 88.8
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.2e-33 146.4 80 88.8
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.6e-33 146.0 80 88.8
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.6e-33 146.0 80 88.8
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.6e-33 146.0 80 87.5
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.6e-33 146.0 80 87.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.6e-33 146.0 93 75.3
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.6e-33 146.0 80 92.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.6e-33 146.0 80 88.8
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.6e-33 146.0 84 86.9
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.1e-33 145.6 79 89.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.1e-33 145.6 77 90.9
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.1e-33 145.6 79 89.9
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.8e-33 145.2 85 88.2
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.8e-33 145.2 85 88.2
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.8e-33 145.2 83 83.1
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.6e-33 144.8 80 87.5
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 3.6e-33 144.8 85 83.5
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 3.6e-33 144.8 80 86.2
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.7e-33 144.4 82 86.6
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 4.7e-33 144.4 80 90.0
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 4.7e-33 144.4 77 92.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 4.7e-33 144.4 77 88.3
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 4.7e-33 144.4 77 92.2
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 6.2e-33 144.1 77 90.9
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 6.2e-33 144.1 77 90.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 8.1e-33 143.7 80 86.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 8.1e-33 143.7 83 81.9
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 8.1e-33 143.7 77 88.3
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.1e-32 143.3 80 86.2
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.1e-32 143.3 82 84.1
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.4e-32 142.9 80 87.5
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.4e-32 142.9 82 85.4
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 1.4e-32 142.9 80 87.5
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.4e-32 142.9 82 85.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.4e-32 142.9 77 88.3
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.3e-32 142.1 77 88.3
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.3e-32 142.1 79 84.8
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.1e-32 141.7 79 86.1
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 4.0e-32 141.4 80 86.2
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 5.2e-32 141.0 80 85.0
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 6.8e-32 140.6 73 94.5
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 6.8e-32 140.6 77 83.1
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 8.9e-32 140.2 75 89.3
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 8.9e-32 140.2 80 83.8
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.2e-31 139.8 77 83.1
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.2e-31 139.8 77 83.1
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.2e-31 139.8 78 85.9
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.2e-31 139.8 78 85.9
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.5e-31 139.4 77 85.7
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.5e-31 139.4 78 85.9
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 1.5e-31 139.4 77 85.7
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.5e-31 139.4 75 90.7
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 2.0e-31 139.0 77 85.7
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 85.7
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.6e-31 138.7 79 83.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.6e-31 138.7 80 83.8
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 3.4e-31 138.3 80 82.5
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.4e-31 138.3 80 83.8
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 5.8e-31 137.5 75 88.0
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 5.8e-31 137.5 79 83.5
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 7.5e-31 137.1 79 83.5
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 7.5e-31 137.1 75 89.3
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.5e-31 137.1 80 85.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.7e-30 136.0 80 82.5
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 4.9e-30 134.4 78 83.3
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 6.4e-30 134.0 83 78.3
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 8.3e-30 133.7 77 83.1
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.3e-30 133.7 77 81.8
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 8.3e-30 133.7 81 84.0
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.4e-29 132.9 77 80.5
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.4e-29 132.9 89 73.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.9e-29 132.5 76 80.3
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.2e-29 131.7 75 84.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.4e-29 131.0 82 80.5
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 5.4e-29 131.0 71 91.5
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 9.2e-29 130.2 77 74.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.2e-28 129.8 77 80.5
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.2e-28 129.8 77 80.5
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 1.6e-28 129.4 71 88.7
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.1e-28 129.0 76 82.9
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.8e-28 127.1 80 78.8
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.8e-28 127.1 80 78.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.0e-27 126.7 77 72.7
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.3e-27 126.3 76 78.9
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 2.3e-27 125.6 77 71.4
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 3.0e-27 125.2 88 69.3
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 6.6e-27 124.0 105 66.7
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.1e-24 116.7 83 73.5
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.3e-22 109.8 70 67.1
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 2.2e-22 109.0 75 61.3
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 4.9e-22 107.8 71 74.6
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 8.4e-22 107.1 54 98.1
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.1e-21 106.7 57 91.2
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 1.4e-21 106.3 56 92.9
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.1e-20 102.4 56 83.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 5.1e-19 97.8 55 87.3
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.1e-17 92.4 54 83.3
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.8e-16 89.4 88 50.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 9.9e-15 83.6 61 70.5
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 8.4e-14 80.5 69 52.2
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 8.4e-14 80.5 60 65.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 6.0e-12 74.3 78 46.2
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.3e-11 73.2 75 54.7
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 6.9e-08 60.8 29 96.6


User provided reference genes

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