Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 6.2e-27 123.2 57 100.0
BolC6t40376H Brassica oleracea HOM05D005650 ORTHO05D040396 2.9e-16 87.8 42 92.9
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 3.3e-12 74.3 45 80.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 5.7e-12 73.6 40 92.5
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 7.4e-12 73.2 43 83.7
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-11 72.0 40 90.0
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 1.7e-11 72.0 40 90.0
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 2.2e-11 71.6 40 87.5
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 4.8e-11 70.5 40 87.5
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.8e-11 70.5 48 75.0
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.4e-10 68.9 42 83.3
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 1.8e-10 68.6 46 73.9
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 2.4e-10 68.2 46 73.9
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.1e-10 67.8 40 85.0
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 3.1e-10 67.8 40 85.0
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 4.1e-10 67.4 40 82.5
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.1e-10 67.4 40 82.5
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 4.1e-10 67.4 46 71.7
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 5.3e-10 67.0 46 69.6
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 6.9e-10 66.6 40 82.5
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 9.1e-10 66.2 41 78.0
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.2e-09 65.9 46 69.6
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.5e-09 65.5 46 67.4
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.5e-09 65.5 46 67.4
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.5e-09 65.5 49 65.3
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 2.0e-09 65.1 41 73.2
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.6e-09 64.7 49 71.4
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 2.6e-09 64.7 45 71.1
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 2.6e-09 64.7 45 71.1
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.6e-09 64.7 40 77.5
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.6e-09 64.7 46 67.4
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.4e-09 64.3 43 74.4
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 3.4e-09 64.3 42 76.2
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 3.4e-09 64.3 40 72.5
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 3.4e-09 64.3 40 72.5
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 4.5e-09 63.9 40 77.5
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 4.5e-09 63.9 48 68.8
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 4.5e-09 63.9 48 68.8
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 4.5e-09 63.9 46 69.6
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 4.5e-09 63.9 46 69.6
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 5.9e-09 63.5 46 69.6
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 5.9e-09 63.5 46 69.6
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 5.9e-09 63.5 41 73.2
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 5.9e-09 63.5 41 73.2
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 7.7e-09 63.2 38 81.6
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 7.7e-09 63.2 40 80.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 7.7e-09 63.2 40 80.0
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 7.7e-09 63.2 40 77.5
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 7.7e-09 63.2 46 65.2
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 7.7e-09 63.2 40 80.0
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 7.7e-09 63.2 46 67.4
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.0e-08 62.8 43 69.8
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.0e-08 62.8 40 75.0
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 1.0e-08 62.8 41 70.7
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.0e-08 62.8 46 65.2
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 1.3e-08 62.4 46 65.2
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 1.3e-08 62.4 46 69.6
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.3e-08 62.4 40 72.5
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-08 62.0 45 66.7
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.7e-08 62.0 46 63.0
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 1.7e-08 62.0 46 67.4
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 2.2e-08 61.6 45 68.9
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 2.2e-08 61.6 45 68.9
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 2.2e-08 61.6 40 77.5
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 2.2e-08 61.6 46 69.6
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.9e-08 61.2 44 68.2
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 2.9e-08 61.2 46 63.0
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 3.8e-08 60.8 46 65.2
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 3.8e-08 60.8 42 69.0
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 3.8e-08 60.8 46 65.2
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 3.8e-08 60.8 46 63.0
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 3.8e-08 60.8 40 77.5
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 3.8e-08 60.8 46 60.9
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 3.8e-08 60.8 46 60.9
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 3.8e-08 60.8 46 67.4
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.0e-08 60.5 40 75.0
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 5.0e-08 60.5 46 65.2
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 5.0e-08 60.5 40 70.0
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 5.0e-08 60.5 43 69.8
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 5.0e-08 60.5 46 65.2
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 6.5e-08 60.1 46 63.0
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 6.5e-08 60.1 46 67.4
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 6.5e-08 60.1 40 72.5
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 6.5e-08 60.1 40 72.5
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 6.5e-08 60.1 40 72.5
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 6.5e-08 60.1 46 58.7
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 8.5e-08 59.7 41 68.3
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 8.5e-08 59.7 40 72.5
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 1.1e-07 59.3 40 72.5
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.1e-07 59.3 40 70.0
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.1e-07 59.3 40 72.5
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.4e-07 58.9 45 64.4
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.4e-07 58.9 46 65.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 1.4e-07 58.9 46 63.0
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.9e-07 58.5 46 63.0
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 1.9e-07 58.5 46 63.0
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.9e-07 58.5 46 63.0
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.9e-07 58.5 46 60.9
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.5e-07 58.2 42 71.4
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 2.5e-07 58.2 40 75.0
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 3.2e-07 57.8 41 63.4
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 3.2e-07 57.8 40 70.0
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 7.2e-07 56.6 42 66.7
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 7.2e-07 56.6 41 65.9
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 7.2e-07 56.6 46 58.7
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 9.4e-07 56.2 46 52.2
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.2e-06 55.8 46 52.2
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 2.7e-06 54.7 40 70.0
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 3.6e-06 54.3 45 57.8
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 3.6e-06 54.3 40 65.0
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 7.9e-06 53.1 46 56.5


User provided reference genes

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