Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47491 Brassica carinata HOM05D007547 ORTHO05D009590 1.3e-35 152.5 79 100.0
C06p53150 Brassica napus HOM05D007547 ORTHO05D009590 1.3e-35 152.5 79 100.0
BolC6t40331H Brassica oleracea HOM05D007547 ORTHO05D009590 1.3e-35 152.5 79 100.0
BraA07t31944Z Brassica rapa HOM05D007547 ORTHO05D009590 3.0e-35 151.4 79 98.7
Sp5g34290 Schrenkiella parvula HOM05D007547 ORTHO05D009590 1.2e-31 139.4 78 89.7
A07p27220 Brassica napus HOM05D007547 ORTHO05D009590 1.5e-31 139.0 79 88.6
BraA07t30366Z Brassica rapa HOM05D007547 ORTHO05D009590 1.5e-31 139.0 79 88.6
CARHR072880 Cardamine hirsuta HOM05D007547 ORTHO05D009590 2.6e-31 138.3 79 88.6
AL4G11130 Arabidopsis lyrata HOM05D007547 ORTHO05D009590 4.4e-31 137.5 79 87.3
Carub.0004s0086 Capsella rubella HOM05D007547 ORTHO05D009590 5.8e-31 137.1 79 87.3
BcaC08g45367 Brassica carinata HOM05D007547 ORTHO05D009590 7.6e-31 136.7 79 87.3
BolC6t38159H Brassica oleracea HOM05D007547 ORTHO05D009590 7.6e-31 136.7 79 87.3
AT2G21820 Arabidopsis thaliana HOM05D007547 ORTHO05D009590 1.3e-30 136.0 79 87.3
Thhalv10019600m.g Eutrema salsugineum HOM05D007547 ORTHO05D009590 1.7e-30 135.6 79 86.1
Aa31LG4G1780 Aethionema arabicum HOM05D007547 ORTHO05D009590 4.1e-29 131.0 79 83.5
THA.LOC104808152 Tarenaya hassleriana HOM05D007547 ORTHO05D009590 2.3e-27 125.2 79 79.7
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 8.7e-27 123.2 77 80.5
CSS0011642 Camellia sinensis var. sinensis HOM05D007547 ORTHO05D009590 9.6e-26 119.8 79 79.7
C06p29990 Brassica napus HOM05D007547 ORTHO05D009590 2.8e-25 118.2 68 85.3
CANSAT56G0291 Cannabis sativa HOM05D007547 ORTHO05D009590 4.7e-25 117.5 77 72.7
MELO3C026033.2 Cucumis melo HOM05D007547 ORTHO05D009590 8.1e-25 116.7 79 75.9
Manes.11G079000 Manihot esculenta HOM05D007547 ORTHO05D009590 8.1e-25 116.7 78 73.1
Migut.M01490 Erythranthe guttata HOM05D007547 ORTHO05D009590 2.4e-24 115.2 79 73.4
Phvul.005G044200 Phaseolus vulgaris HOM05D007547 ORTHO05D009590 3.1e-24 114.8 79 73.4
MD05G1241500 Malus domestica HOM05D007547 ORTHO05D009590 5.2e-24 114.0 79 69.6
Sed0025991 Sechium edule HOM05D007547 ORTHO05D009590 5.2e-24 114.0 79 74.7
ClCG04G006620 Citrullus lanatus HOM05D007547 ORTHO05D009590 6.9e-24 113.6 79 73.4
Psat1g131000 Pisum sativum HOM05D007547 ORTHO05D009590 9.0e-24 113.2 79 70.9
TPR.G3626 Trifolium pratense HOM05D007547 ORTHO05D009590 9.0e-24 113.2 79 72.2
Cpa.g.sc118.6 Carica papaya HOM05D007547 ORTHO05D009590 1.2e-23 112.8 80 75.0
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 1.2e-23 112.8 79 70.9
Potri.010G176200 Populus trichocarpa HOM05D007547 ORTHO05D009590 2.0e-23 112.1 78 70.5
TAR624G0069 Trochodendron aralioides HOM05D007547 ORTHO05D009590 2.0e-23 112.1 77 75.3
Lj3g0009805 Lotus japonicus HOM05D007547 ORTHO05D009590 2.6e-23 111.7 79 72.2
Medtr2g062800 Medicago truncatula HOM05D007547 ORTHO05D009590 2.6e-23 111.7 78 70.5
Nn1g09847 Nelumbo nucifera HOM05D007547 ORTHO05D009590 3.4e-23 111.3 78 71.8
QL04p096363 Quercus lobata HOM05D007547 ORTHO05D009590 3.4e-23 111.3 77 68.8
Glyma.08G160800 Glycine max HOM05D007547 ORTHO05D009590 4.4e-23 110.9 79 72.2
Aqoxy1G00763 Aquilegia oxysepala HOM05D007547 ORTHO05D009590 7.6e-23 110.2 79 70.9
DCAR_013700 Daucus carota HOM05D007547 ORTHO05D009590 7.6e-23 110.2 79 69.6
SalBow8G1259 Salvia bowleyana HOM05D007547 ORTHO05D009590 7.6e-23 110.2 84 71.4
QL04p096330 Quercus lobata HOM05D007547 ORTHO05D009590 9.9e-23 109.8 77 68.8
Lalb_Chr25g0284091 Lupinus albus HOM05D007547 ORTHO05D009590 1.3e-22 109.4 79 72.2
TWI59G1298 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.2e-22 108.6 79 72.2
CDE06G1569 Ceratophyllum demersum HOM05D000146 ORTHO05D000178 4.9e-22 107.5 77 68.8
CsaV3_4G026690 Cucumis sativus L. HOM05D007547 ORTHO05D009590 8.4e-22 106.7 74 73.0
Nitab4.5_0009717g0010 Nicotiana tabacum HOM05D007547 ORTHO05D009590 8.4e-22 106.7 80 73.8
QL04p096133 Quercus lobata HOM05D007547 ORTHO05D009590 1.4e-21 105.9 77 68.8
Nitab4.5_0003384g0040 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.9e-21 105.5 79 70.9
FAN16G2958 Fragaria x ananassa HOM05D007547 ORTHO05D009590 4.2e-21 104.4 79 65.8
RcHm_v2.0_Chr5g0022881 Rosa chinensis HOM05D007547 ORTHO05D009590 7.1e-21 103.6 78 65.4
Nitab4.5_0001982g0020 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.2e-20 102.8 80 70.0
Eucgr.F04485 Eucalyptus grandis HOM05D007547 ORTHO05D009590 1.6e-20 102.4 90 64.4
PSO541G4573 Papaver somniferum HOM05D007547 ORTHO05D009590 1.6e-20 102.4 88 67.0
Peaxi162Scf00479g00092 Petunia axillaris HOM05D007547 ORTHO05D009590 1.6e-20 102.4 80 68.8
HPP92_021471 Vanilla planifolia HOM05D007547 ORTHO05D009590 1.6e-20 102.4 81 65.4
unitig_26.g10053 Utricularia gibba HOM05D007547 ORTHO05D009590 2.7e-20 101.7 78 66.7
BcaB02g07207 Brassica carinata HOM05D007547 ORTHO05D009590 4.6e-20 100.9 79 69.6
FAN11G3189 Fragaria x ananassa HOM05D007547 ORTHO05D009590 7.8e-20 100.1 77 63.6
PGSC0003DMG400018766 Solanum tuberosum HOM05D007547 ORTHO05D009590 1.3e-19 99.4 79 65.8
Thecc.10G021200 Theobroma cacao HOM05D007547 ORTHO05D009590 1.3e-19 99.4 82 64.6
Ah.11g039500 Amaranthus hybridus HOM05D007547 ORTHO05D009590 1.7e-19 99.0 81 67.9
CAN.G497.31 Capsicum annuum HOM05D007547 ORTHO05D009590 3.0e-19 98.2 80 66.2
COL.COLO4_25679 Corchorus olitorius HOM05D007547 ORTHO05D009590 3.9e-19 97.8 80 65.0
Gohir.D05G303200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 5.1e-19 97.4 81 65.4
Gorai.009G322400 Gossypium raimondii HOM05D007547 ORTHO05D009590 5.1e-19 97.4 81 65.4
Sc15g0005120 Simmondsia chinensis HOM05D007547 ORTHO05D009590 5.1e-19 97.4 82 69.5
EL10Ac1g02249 Beta vulgaris HOM05D007547 ORTHO05D009590 1.1e-18 96.3 83 66.3
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 1.1e-18 96.3 75 68.0
Solyc03g046380.1 Solanum lycopersicum HOM05D007547 ORTHO05D009590 1.9e-18 95.5 79 64.6
Atru.chr1.6 Acer truncatum HOM05D007547 ORTHO05D009590 2.5e-18 95.1 81 64.2
Gohir.A06G138100 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.3e-18 94.7 81 61.7
Gohir.A07G180700 Gossypium hirsutum HOM05D007547 ORTHO05D009590 4.3e-18 94.4 81 61.7
Gohir.D03G067200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 4.3e-18 94.4 81 61.7
Sopen03g010530 Solanum pennellii HOM05D007547 ORTHO05D009590 4.3e-18 94.4 79 63.3
GSVIVG01036687001 Vitis vinifera HOM05D007547 ORTHO05D009590 4.3e-18 94.4 63 79.4
Gorai.008G081200 Gossypium raimondii HOM05D007547 ORTHO05D009590 5.6e-18 94.0 81 63.0
PGR031G1160 Punica granatum HOM05D007547 ORTHO05D009590 5.6e-18 94.0 80 63.8
Gohir.A02G145400 Gossypium hirsutum HOM05D007547 ORTHO05D009590 9.6e-18 93.2 81 60.5
Lalb_Chr25g0284071 Lupinus albus HOM05D007547 ORTHO05D009590 1.6e-17 92.4 77 66.2
CDE02G1937 Ceratophyllum demersum HOM05D007547 ORTHO05D009590 2.1e-17 92.0 77 64.9
Gohir.A05G237600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.1e-17 92.0 81 60.5
Gohir.D03G007300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.1e-17 92.0 81 60.5
Gohir.D11G227600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.1e-17 92.0 81 60.5
Gohir.A11G192300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.6e-17 91.3 81 60.5
TWI38G1141 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 6.2e-17 90.5 82 59.8
TWI38G2170 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 6.2e-17 90.5 82 59.8
AUR62035430 Chenopodium quinoa HOM05D007547 ORTHO05D009590 1.4e-16 89.4 83 63.9
AUR62035713 Chenopodium quinoa HOM05D007547 ORTHO05D009590 2.4e-16 88.6 83 62.7
ECA234G4113 Erigeron canadensis HOM05D007547 ORTHO05D009590 2.4e-16 88.6 90 56.7
Ciclev10007105m.g Citrus clementina HOM05D007547 ORTHO05D009590 1.5e-15 85.9 90 58.9
Peaxi162Scf00020g01922 Petunia axillaris HOM05D007547 ORTHO05D009590 1.5e-15 85.9 65 70.8
Lsat_1_v5_gn_5_102841 Lactuca sativa HOM05D007547 ORTHO05D009590 2.0e-15 85.5 90 53.3
Rhsim04G0026600 Rhododendron simsii HOM05D007547 ORTHO05D009590 5.8e-15 84.0 81 59.3
Gohir.A05G304300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.2e-14 82.0 73 60.3
Os08g0385000 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 2.9e-14 81.6 89 53.9
Zm00001eb055260 Zea mays HOM05D007547 ORTHO05D009590 1.4e-13 79.3 96 52.1
Os01g0654400 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 1.2e-12 76.3 82 54.9
AL2G39720 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 3.3e-10 68.2 47 72.3
SMO145G0072 Selaginella moellendorffii HOM05D007547 ORTHO05D009590 4.8e-09 64.3 81 53.1
Mapoly0106s0030 Marchantia polymorpha HOM05D007547 ORTHO05D009590 4.0e-08 61.2 85 45.9


User provided reference genes

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