Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 3.4e-105 385.2 223 100.0
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 3.4e-105 385.2 223 100.0
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 3.4e-105 385.2 223 100.0
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 5.9e-105 384.4 223 99.6
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 5.9e-105 384.4 223 99.6
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.5e-103 379.0 223 98.7
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.5e-103 379.0 223 98.7
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 7.2e-103 377.5 223 98.2
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 7.2e-103 377.5 223 98.2
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-102 376.7 223 98.2
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.2e-102 376.7 223 98.2
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 7.9e-102 374.0 224 97.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.0e-101 373.6 223 96.9
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.0e-101 373.6 223 96.9
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.0e-101 373.6 223 96.9
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 7.4e-100 367.5 223 95.5
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.2e-99 365.9 223 94.6
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 8.2e-99 364.0 223 95.1
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.8e-98 362.8 223 94.2
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.4e-98 362.5 223 94.2
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 9.1e-98 360.5 223 93.7
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 9.1e-98 360.5 223 93.7
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.7e-96 356.3 223 92.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.9e-96 355.5 223 93.7
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.7e-94 348.2 223 90.1
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.3e-92 342.0 220 90.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.1e-90 337.0 205 95.1
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.4e-90 336.7 222 88.7
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.0e-90 334.3 223 87.9
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 7.0e-90 334.3 223 87.9
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.1e-90 334.0 223 87.9
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 9.1e-90 334.0 223 87.4
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.6e-89 333.2 223 87.9
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.0e-89 332.8 203 95.1
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.5e-89 332.0 223 87.4
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.9e-89 331.3 224 88.4
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.9e-89 331.3 224 88.4
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 5.9e-89 331.3 223 87.9
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 7.7e-89 330.9 223 87.9
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.0e-88 330.5 223 87.4
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.0e-88 330.5 223 87.0
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.3e-88 330.1 198 96.5
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.3e-88 330.1 205 94.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.7e-88 329.7 226 86.7
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-88 329.7 224 87.9
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 2.2e-88 329.3 223 87.4
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 2.2e-88 329.3 229 84.7
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.2e-88 329.3 222 86.0
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 2.9e-88 328.9 227 86.8
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 86.5
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 86.5
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 85.2
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 86.1
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.9e-87 326.2 230 86.1
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 87.0
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 85.2
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 86.1
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.2e-87 325.5 223 85.7
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.2e-87 325.5 221 86.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 4.2e-87 325.1 228 85.1
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 4.2e-87 325.1 229 84.7
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 84.8
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 86.1
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 5.5e-87 324.7 236 83.1
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 5.5e-87 324.7 223 86.1
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 5.5e-87 324.7 223 86.1
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 5.5e-87 324.7 223 85.7
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 7.2e-87 324.3 223 85.7
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.2e-87 324.3 229 84.3
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.2e-87 324.3 229 84.3
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 9.4e-87 323.9 227 85.0
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 85.2
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.1e-86 322.8 223 85.2
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.1e-86 322.8 230 84.3
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 2.7e-86 322.4 225 84.9
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 4.7e-86 321.6 226 83.6
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.7e-86 321.6 230 83.5
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.1e-86 321.2 230 83.5
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.0e-86 320.9 229 83.4
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 8.0e-86 320.9 229 82.5
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 8.0e-86 320.9 223 85.7
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 8.0e-86 320.9 223 85.2
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.0e-85 320.5 229 83.4
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.0e-85 320.5 225 84.9
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.0e-85 320.5 225 84.9
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 1.8e-85 319.7 223 85.2
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.3e-85 319.3 225 84.9
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.3e-85 319.3 223 83.9
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.3e-85 319.3 230 83.0
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 2.3e-85 319.3 230 83.0
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.3e-85 319.3 230 83.0
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 5.2e-85 318.2 227 83.7
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 6.8e-85 317.8 223 84.8
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 6.8e-85 317.8 225 84.4
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 8.8e-85 317.4 229 82.5
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.5e-84 316.6 223 84.8
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.0e-84 316.2 233 82.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 2.0e-84 316.2 229 83.8
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.0e-84 316.2 227 82.4
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.6e-84 315.8 224 84.8
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 2.6e-84 315.8 230 82.2
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.6e-84 315.8 230 82.2
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 3.4e-84 315.5 222 84.2
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 3.4e-84 315.5 229 82.5
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.4e-84 315.5 225 84.9
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.4e-84 315.1 224 84.4
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 4.4e-84 315.1 228 82.0
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 4.4e-84 315.1 229 82.1
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 5.7e-84 314.7 222 83.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 9.8e-84 313.9 228 81.6
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.3e-83 313.5 225 84.4
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.7e-83 313.2 230 81.7
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.2e-83 312.8 201 92.5
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 3.7e-83 312.0 223 82.5
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 3.7e-83 312.0 223 82.1
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.1e-82 310.5 223 83.9
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 1.4e-82 310.1 232 81.5
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.4e-82 309.3 223 82.5
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 2.0e-81 306.2 223 80.7
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.5e-80 300.8 212 84.9
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.1e-79 300.4 229 80.3
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.5e-79 300.1 185 93.5
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 3.2e-79 298.9 185 93.5
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 5.5e-79 298.1 228 78.5
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.2e-78 297.0 185 92.4
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.6e-78 296.6 226 81.4
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 4.7e-78 295.0 180 95.0
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-77 293.9 197 88.3
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.4e-77 293.5 226 80.5
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 2.3e-77 292.7 179 95.0
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 2.3e-77 292.7 229 79.5
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.4e-74 282.7 279 58.8
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 2.0e-73 279.6 180 89.4
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.3e-72 276.2 168 95.2
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 3.4e-68 262.3 191 83.2
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 3.4e-68 262.3 177 86.4
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 3.4e-68 262.3 177 86.4
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.7e-67 258.8 193 83.4
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 6.4e-67 258.1 209 76.1
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.1e-66 257.3 166 89.2
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 4.6e-65 251.9 183 83.1
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 4.6e-65 251.9 197 78.7
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.8e-65 251.1 220 65.5
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 6.6e-64 248.1 148 98.6
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.5e-63 246.1 181 80.7
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.8e-61 240.0 202 73.8
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.0e-60 236.5 148 91.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.0e-57 226.5 166 80.7
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 6.0e-57 224.9 178 78.1
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.3e-56 223.8 178 69.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 6.6e-56 221.5 136 97.8
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 6.2e-54 214.9 156 73.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-53 214.2 238 57.1
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.4e-53 213.8 166 75.3
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 2.0e-52 209.9 162 80.9
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.2e-50 202.6 132 93.9
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 2.7e-49 199.5 168 73.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 3.6e-46 189.1 112 82.1
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.1e-42 177.6 137 67.2
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 5.4e-42 175.3 152 64.5
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.2e-35 153.3 205 49.3
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.2e-33 147.5 123 65.0
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 2.3e-32 143.3 127 61.4
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 4.5e-28 129.0 92 72.8
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.9e-18 97.1 109 49.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 3.2e-18 96.3 47 97.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 6.0e-17 92.0 78 64.1
AL4G14590 Arabidopsis lyrata HOM05D004278 ORTHO05D079904 2.9e-11 73.2 44 86.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.3e-08 64.3 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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