Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 2.2e-172 609.0 327 100.0
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 3.1e-171 605.1 327 99.1
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.3e-169 599.7 337 96.7
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 2.5e-168 595.5 327 97.9
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 7.9e-167 590.5 327 97.2
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.3e-161 573.2 327 96.0
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 9.4e-152 540.4 334 90.1
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.7e-148 528.5 333 88.0
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.8e-147 526.2 335 86.3
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 9.1e-147 523.9 334 86.8
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.7e-145 519.6 336 85.4
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 6.7e-142 507.7 337 81.9
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.0e-138 496.1 335 83.0
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 2.9e-129 465.7 337 76.0
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 9.8e-109 397.5 324 66.7
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 1.7e-108 396.7 267 74.5
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 3.7e-108 395.6 267 74.2
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.7e-108 395.6 266 75.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.1e-107 394.0 264 74.2
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.4e-107 393.7 315 66.3
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.9e-107 393.3 262 75.2
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.4e-107 392.9 267 74.5
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 3.2e-107 392.5 266 75.9
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 4.1e-107 392.1 316 67.1
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 5.4e-107 391.7 266 74.8
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.6e-106 390.2 256 75.8
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.1e-106 389.8 261 75.1
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 2.7e-106 389.4 317 66.6
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 3.5e-106 389.0 319 66.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 3.5e-106 389.0 266 74.1
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 6.0e-106 388.3 310 66.5
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 6.0e-106 388.3 304 67.4
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 6.0e-106 388.3 304 67.4
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.3e-105 386.3 270 72.6
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 3.0e-105 386.0 266 72.9
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 5.1e-105 385.2 320 64.1
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.1e-104 384.0 267 72.3
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 1.1e-104 384.0 261 73.2
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.1e-104 384.0 354 61.3
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-104 384.0 308 67.2
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.5e-104 383.6 266 74.1
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.9e-104 383.3 272 71.7
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.5e-104 382.9 262 72.5
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 2.5e-104 382.9 324 65.4
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 3.3e-104 382.5 263 72.2
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.3e-104 382.5 258 75.2
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 4.3e-104 382.1 287 69.0
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 5.6e-104 381.7 267 73.8
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 5.6e-104 381.7 262 72.1
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 5.6e-104 381.7 322 66.8
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.2e-103 380.6 323 64.4
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.2e-103 380.6 267 71.5
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 1.2e-103 380.6 328 61.6
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 2.1e-103 379.8 319 65.2
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.8e-103 379.4 267 71.5
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.7e-103 378.6 267 71.2
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 8.1e-103 377.9 265 72.8
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 8.1e-103 377.9 259 75.3
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.1e-102 377.5 289 67.8
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.4e-102 377.1 267 70.4
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 1.8e-102 376.7 261 74.3
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 2.3e-102 376.3 321 64.5
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 3.1e-102 375.9 273 71.4
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 8.9e-102 374.4 327 62.7
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 2.0e-101 373.2 283 69.3
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.6e-101 372.9 269 71.0
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 3.4e-101 372.5 260 72.7
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 5.8e-101 371.7 324 64.5
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.7e-100 370.2 283 67.5
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.2e-100 369.8 339 61.7
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.7e-100 369.0 327 63.6
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.1e-99 367.5 262 70.6
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.4e-99 367.1 317 64.0
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.4e-99 367.1 256 72.3
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.4e-99 367.1 275 69.1
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 2.4e-99 366.3 263 71.9
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 2.4e-99 366.3 315 63.8
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 4.1e-99 365.5 308 63.6
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 9.2e-99 364.4 331 61.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 9.2e-99 364.4 271 70.5
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.1e-98 363.2 339 61.7
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 2.7e-98 362.8 275 68.4
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 6.0e-98 361.7 321 62.0
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 7.8e-98 361.3 312 62.8
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 3.0e-97 359.4 261 69.7
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 5.1e-97 358.6 269 68.4
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 4.7e-95 352.1 369 56.4
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 8.1e-95 351.3 291 64.9
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 4.0e-94 349.0 381 54.9
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.2e-93 347.4 322 59.0
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.5e-93 347.1 281 65.1
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 2.2e-92 343.2 317 60.6
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 4.9e-92 342.0 260 67.7
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 3.3e-88 329.3 243 68.3
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 3.3e-88 329.3 243 68.3
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.4e-86 323.9 257 62.6
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 5.3e-86 322.0 294 60.5
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 5.8e-85 318.5 278 61.2
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 1.7e-84 317.0 238 66.0
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 2.7e-82 309.7 416 45.9
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.6e-79 300.4 257 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 4.2e-75 285.8 265 54.3
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 7.1e-75 285.0 197 73.6
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 1.6e-74 283.9 205 69.8
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 3.5e-74 282.7 262 62.2
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.9e-72 276.9 222 63.5
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.5e-72 276.6 238 63.0
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 7.4e-72 275.0 301 53.2
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 9.6e-72 274.6 248 62.1
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.3e-71 274.2 240 56.2
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.7e-71 272.7 254 55.5
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 9.0e-70 268.1 181 75.7
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 4.9e-68 262.3 240 55.8
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.4e-67 260.8 285 49.1
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.1e-62 244.6 238 53.8
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.0e-53 213.8 164 67.7
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 4.5e-53 212.6 220 57.7
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 5.9e-53 212.2 243 47.7
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.4e-51 207.6 272 43.8
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.5e-51 205.7 256 45.3
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 2.7e-50 203.4 209 58.4
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.5e-48 197.6 203 53.7
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 1.8e-41 174.1 308 39.0
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 5.1e-41 172.6 177 53.7
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 4.4e-24 116.3 98 67.3
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 3.2e-19 100.1 73 67.1
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 2.3e-17 94.0 85 58.8
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 1.5e-16 91.3 72 63.9
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.4e-16 90.1 63 68.3
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.9e-12 77.0 57 66.7
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 2.9e-12 77.0 52 75.0
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.5e-08 64.7 88 52.3
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 9.8e-08 62.0 42 69.0
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 2.2e-07 60.8 229 27.9
CARHR072110 Cardamine hirsuta HOM05D005699 ORTHO05D115977 6.4e-07 59.3 32 90.6
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 3.2e-06 57.0 58 48.3
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 9.2e-06 55.5 212 30.7


User provided reference genes

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