Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p51690 Brassica napus HOM05D004443 ORTHO05D005421 4.0e-84 314.7 155 100.0
A07p43040 Brassica napus HOM05D004443 ORTHO05D005421 6.0e-64 247.7 124 96.0
BraA07t31825Z Brassica rapa HOM05D004443 ORTHO05D005421 6.0e-64 247.7 124 96.0
BcaC08g45457 Brassica carinata HOM05D004443 ORTHO05D005421 6.6e-63 244.2 124 95.2
A07p27860 Brassica napus HOM05D004443 ORTHO05D005421 6.6e-63 244.2 124 95.2
C06p30850 Brassica napus HOM05D004443 ORTHO05D005421 6.6e-63 244.2 124 95.2
BolC6t38247H Brassica oleracea HOM05D004443 ORTHO05D005421 6.6e-63 244.2 124 95.2
BraA07t30425Z Brassica rapa HOM05D004443 ORTHO05D005421 6.6e-63 244.2 124 95.2
BcaB02g07128 Brassica carinata HOM05D004443 ORTHO05D005421 1.9e-62 242.7 124 94.4
Sp5g32890 Schrenkiella parvula HOM05D004443 ORTHO05D005421 2.5e-62 242.3 124 94.4
AL2G37950 Arabidopsis lyrata HOM05D004443 ORTHO05D005421 5.6e-62 241.1 124 93.5
AT1G77720 Arabidopsis thaliana HOM05D004443 ORTHO05D005421 1.6e-61 239.6 124 92.7
CARHR071230 Cardamine hirsuta HOM05D004443 ORTHO05D005421 1.6e-61 239.6 124 92.7
Thhalv10018161m.g Eutrema salsugineum HOM05D004443 ORTHO05D005421 1.6e-61 239.6 124 92.7
Carub.0002s2461 Capsella rubella HOM05D004443 ORTHO05D005421 2.1e-61 239.2 124 92.7
Aa31LG7G5960 Aethionema arabicum HOM05D004443 ORTHO05D005421 6.2e-61 237.7 124 91.9
Hund27045 Selenicereus undatus HOM05D004443 ORTHO05D005421 4.9e-58 228.0 124 87.9
THA.LOC104800183 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 1.1e-57 226.9 124 87.9
THA.LOC104813647 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 1.1e-57 226.9 124 87.9
Cpa.g.sc36.11 Carica papaya HOM05D004443 ORTHO05D005421 1.4e-57 226.5 124 88.7
Migut.C01174 Erythranthe guttata HOM05D004443 ORTHO05D005421 2.4e-57 225.7 124 85.5
Dinv07918 Davidia involucrata HOM05D004443 ORTHO05D005421 3.2e-57 225.3 124 85.5
Sed0020608 Sechium edule HOM05D004443 ORTHO05D005421 3.2e-57 225.3 124 86.3
GSVIVG01008926001 Vitis vinifera HOM05D004443 ORTHO05D005421 3.2e-57 225.3 124 87.1
Cfa015975 Carpinus fangiana HOM05D004443 ORTHO05D005421 7.1e-57 224.2 124 85.5
ClCG03G009370 Citrullus lanatus HOM05D004443 ORTHO05D005421 7.1e-57 224.2 124 85.5
CsaV3_5G023250 Cucumis sativus L. HOM05D004443 ORTHO05D005421 7.1e-57 224.2 124 85.5
Ciclev10000257m.g Citrus clementina HOM05D004443 ORTHO05D005421 9.2e-57 223.8 124 84.7
CiPaw.05G227100 Carya illinoinensis HOM05D004443 ORTHO05D005421 1.6e-56 223.0 124 84.7
Dinv27370 Davidia involucrata HOM05D004443 ORTHO05D005421 1.6e-56 223.0 124 85.5
AUR62004709 Chenopodium quinoa HOM05D004443 ORTHO05D005421 2.1e-56 222.6 124 84.7
AUR62023626 Chenopodium quinoa HOM05D004443 ORTHO05D005421 2.1e-56 222.6 124 84.7
Sc01g0001440 Simmondsia chinensis HOM05D004443 ORTHO05D005421 2.1e-56 222.6 124 85.5
TWI56G1242 Tripterygium wilfordii HOM05D004443 ORTHO05D005421 2.1e-56 222.6 124 85.5
MELO3C003047.2 Cucumis melo HOM05D004443 ORTHO05D005421 2.7e-56 222.2 139 78.4
QL09p036005 Quercus lobata HOM05D004443 ORTHO05D005421 3.5e-56 221.9 124 85.5
Actinidia29443 Actinidia chinensis HOM05D004443 ORTHO05D005421 4.6e-56 221.5 124 85.5
Oeu030035.2 Olea europaea HOM05D004443 ORTHO05D005421 4.6e-56 221.5 124 85.5
Oeu047924.1 Olea europaea HOM05D004443 ORTHO05D005421 4.6e-56 221.5 124 84.7
SalBow7G0080 Salvia bowleyana HOM05D004443 ORTHO05D005421 4.6e-56 221.5 124 83.1
SalBow7G4055 Salvia bowleyana HOM05D004443 ORTHO05D005421 4.6e-56 221.5 124 83.1
CAN.G392.3 Capsicum annuum HOM05D004443 ORTHO05D005421 6.0e-56 221.1 124 83.9
Eucgr.F03751 Eucalyptus grandis HOM05D004443 ORTHO05D005421 6.0e-56 221.1 124 85.5
SGA_v2.0_scaffold24G10494 Striga asiatica HOM05D004443 ORTHO05D005421 7.8e-56 220.7 124 83.9
Thecc.08G119500 Theobroma cacao HOM05D004443 ORTHO05D005421 7.8e-56 220.7 124 85.5
EL10Ac1g00020 Beta vulgaris HOM05D004443 ORTHO05D005421 1.0e-55 220.3 124 86.3
Cc10_g10510 Coffea canephora HOM05D004443 ORTHO05D005421 1.0e-55 220.3 124 83.9
Atru.chr13.1339 Acer truncatum HOM05D004443 ORTHO05D005421 1.7e-55 219.5 124 83.9
Atru.chr13.1382 Acer truncatum HOM05D004443 ORTHO05D005421 1.7e-55 219.5 124 83.9
Solyc11g013240.3 Solanum lycopersicum HOM05D004443 ORTHO05D005421 1.7e-55 219.5 124 83.1
Sopen11g008260 Solanum pennellii HOM05D004443 ORTHO05D005421 1.7e-55 219.5 124 83.1
PGSC0003DMG401029032 Solanum tuberosum HOM05D004443 ORTHO05D005421 1.7e-55 219.5 124 83.1
CSS0010818 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 2.3e-55 219.2 124 83.9
CSS0038352 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 2.3e-55 219.2 124 83.9
Glyma.14G164400 Glycine max HOM05D004443 ORTHO05D005421 2.3e-55 219.2 124 83.1
Manes.02G160000 Manihot esculenta HOM05D004443 ORTHO05D005421 2.3e-55 219.2 124 83.9
arahy.Tifrunner.gnm1.ann1.BQZ9WD Arachis hypogaea HOM05D004443 ORTHO05D005421 3.0e-55 218.8 124 83.9
arahy.Tifrunner.gnm1.ann1.ZN5JRL Arachis hypogaea HOM05D004443 ORTHO05D005421 3.0e-55 218.8 124 83.9
Ca_15215_v3 Cicer arietinum L. HOM05D004443 ORTHO05D005421 3.0e-55 218.8 124 83.9
Gorai.009G243100 Gossypium raimondii HOM05D004443 ORTHO05D005421 3.0e-55 218.8 124 83.9
Medtr5g059280 Medicago truncatula HOM05D004443 ORTHO05D005421 3.0e-55 218.8 124 83.1
PGR042G3639 Punica granatum HOM05D004443 ORTHO05D005421 3.0e-55 218.8 124 84.7
Glyma.13G083100 Glycine max HOM05D004443 ORTHO05D005421 3.9e-55 218.4 124 83.1
Gohir.A05G232400 Gossypium hirsutum HOM05D004443 ORTHO05D005421 3.9e-55 218.4 124 83.1
Glyma.04G252700 Glycine max HOM05D004443 ORTHO05D005421 5.1e-55 218.0 124 83.9
CANSAT64G0744 Cannabis sativa HOM05D004443 ORTHO05D005421 6.6e-55 217.6 126 83.3
Glyma.06G109800 Glycine max HOM05D004443 ORTHO05D005421 6.6e-55 217.6 124 84.7
Rhsim06G0108200 Rhododendron simsii HOM05D004443 ORTHO05D005421 6.6e-55 217.6 124 82.3
TPR.G22340 Trifolium pratense HOM05D004443 ORTHO05D005421 6.6e-55 217.6 124 82.3
Lj1g0001137 Lotus japonicus HOM05D004443 ORTHO05D005421 8.6e-55 217.2 124 83.9
Nitab4.5_0000193g0100 Nicotiana tabacum HOM05D004443 ORTHO05D005421 8.6e-55 217.2 124 82.3
Nitab4.5_0000494g0040 Nicotiana tabacum HOM05D004443 ORTHO05D005421 8.6e-55 217.2 124 82.3
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 8.6e-55 217.2 126 82.5
FvH4_2g26330 Fragaria vesca HOM05D004443 ORTHO05D005421 1.1e-54 216.9 124 82.3
Gohir.A06G041700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 1.1e-54 216.9 124 83.1
Gohir.D06G042700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 1.1e-54 216.9 124 83.1
Phvul.009G121600 Phaseolus vulgaris HOM05D004443 ORTHO05D005421 1.1e-54 216.9 124 83.9
Sabra02G0069100 Salix brachista HOM05D004443 ORTHO05D005421 1.1e-54 216.9 124 83.9
TPR.G8515 Trifolium pratense HOM05D004443 ORTHO05D005421 1.1e-54 216.9 124 82.3
TAR376G1068 Trochodendron aralioides HOM05D004443 ORTHO05D005421 1.1e-54 216.9 124 83.9
Ah.05g172330 Amaranthus hybridus HOM05D004443 ORTHO05D005421 1.5e-54 216.5 124 85.5
MSTRG.1478 Avicennia marina HOM05D004443 ORTHO05D005421 1.5e-54 216.5 124 82.3
FAN20G1735 Fragaria x ananassa HOM05D004443 ORTHO05D005421 1.5e-54 216.5 124 82.3
RcHm_v2.0_Chr6g0294911 Rosa chinensis HOM05D004443 ORTHO05D005421 1.5e-54 216.5 124 82.3
VMungo1309G0089 Vigna mungo HOM05D004443 ORTHO05D005421 1.5e-54 216.5 124 83.1
FAN27G0670 Fragaria x ananassa HOM05D004443 ORTHO05D005421 1.9e-54 216.1 124 82.3
TAR628G1041 Trochodendron aralioides HOM05D004443 ORTHO05D005421 1.9e-54 216.1 124 82.3
Lalb_Chr23g0270831 Lupinus albus HOM05D004443 ORTHO05D005421 2.5e-54 215.7 124 82.3
Gohir.D05G234800 Gossypium hirsutum HOM05D004443 ORTHO05D005421 3.3e-54 215.3 124 83.1
Lsat_1_v5_gn_6_112781 Lactuca sativa HOM05D004443 ORTHO05D005421 3.3e-54 215.3 148 74.3
ECA246G2537 Erigeron canadensis HOM05D004443 ORTHO05D005421 4.3e-54 214.9 124 82.3
Peaxi162Scf00339g00047 Petunia axillaris HOM05D004443 ORTHO05D005421 4.3e-54 214.9 153 69.9
FAN15G1735 Fragaria x ananassa HOM05D004443 ORTHO05D005421 5.6e-54 214.5 124 81.5
Potri.002G087600 Populus trichocarpa HOM05D004443 ORTHO05D005421 5.6e-54 214.5 124 83.1
Potri.005G173300 Populus trichocarpa HOM05D004443 ORTHO05D005421 5.6e-54 214.5 124 83.1
Prupe.1G503700 Prunus persica HOM05D004443 ORTHO05D005421 5.6e-54 214.5 124 82.3
vmacro12543 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 5.6e-54 214.5 124 80.6
Medtr3g072990 Medicago truncatula HOM05D004443 ORTHO05D005421 9.5e-54 213.8 155 69.0
unitig_0.g2123 Utricularia gibba HOM05D004443 ORTHO05D005421 9.5e-54 213.8 126 81.7
Gorai.010G047900 Gossypium raimondii HOM05D004443 ORTHO05D005421 1.2e-53 213.4 124 81.5
Lj4A595G17 Lonicera japonica HOM05D004443 ORTHO05D005421 1.2e-53 213.4 124 81.5
MD15G1356500 Malus domestica HOM05D004443 ORTHO05D005421 1.2e-53 213.4 124 81.5
Sabra05G0130800 Salix brachista HOM05D004443 ORTHO05D005421 1.2e-53 213.4 124 83.1
Nn5g28118 Nelumbo nucifera HOM05D004443 ORTHO05D005421 1.6e-53 213.0 124 79.8
Migut.N03312 Erythranthe guttata HOM05D004443 ORTHO05D005421 2.1e-53 212.6 124 80.6
DCAR_002660 Daucus carota HOM05D004443 ORTHO05D005421 2.8e-53 212.2 124 80.6
Lj4A601G4 Lonicera japonica HOM05D004443 ORTHO05D005421 2.8e-53 212.2 124 80.6
HanXRQChr04g0111641 Helianthus annuus HOM05D004443 ORTHO05D005421 3.6e-53 211.8 124 81.5
Manes.18G073900 Manihot esculenta HOM05D004443 ORTHO05D005421 6.2e-53 211.1 124 81.5
unitig_747.g21486 Utricularia gibba HOM05D004443 ORTHO05D005421 8.1e-53 210.7 126 82.5
Aqoxy5G02432 Aquilegia oxysepala HOM05D004443 ORTHO05D005421 1.1e-52 210.3 124 78.2
MBI06_g01059_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 1.8e-52 209.5 137 75.2
PSO170G3840 Papaver somniferum HOM05D004443 ORTHO05D005421 2.4e-52 209.1 124 78.2
CSS0006777 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 4.0e-52 208.4 124 83.9
CSS0010068 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 4.0e-52 208.4 124 83.9
Lalb_Chr08g0241621 Lupinus albus HOM05D004443 ORTHO05D005421 4.0e-52 208.4 124 79.0
MBI03_g28297_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 4.0e-52 208.4 124 77.4
Psat2g079080 Pisum sativum HOM05D004443 ORTHO05D005421 4.0e-52 208.4 124 79.0
CDE11G0263 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 5.2e-52 208.0 155 66.5
CDE05G2151 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 6.8e-52 207.6 138 73.9
COL.COLO4_38348 Corchorus olitorius HOM05D004443 ORTHO05D005421 1.5e-51 206.5 158 67.1
Psat5g133680 Pisum sativum HOM05D004443 ORTHO05D005421 1.5e-51 206.5 155 67.1
FAN24G3433 Fragaria x ananassa HOM05D004443 ORTHO05D005421 4.4e-51 204.9 138 73.2
HanXRQChr05g0151061 Helianthus annuus HOM05D004443 ORTHO05D005421 9.9e-51 203.8 125 77.6
ATR0684G022 Amborella trichopoda HOM05D004443 ORTHO05D005421 1.7e-50 203.0 124 78.2
Lsat_1_v5_gn_1_8300 Lactuca sativa HOM05D004443 ORTHO05D005421 1.7e-50 203.0 126 77.0
SGA_v2.0_scaffold52G19007 Striga asiatica HOM05D004443 ORTHO05D005421 3.8e-50 201.8 171 63.7
HPP92_004123 Vanilla planifolia HOM05D004443 ORTHO05D005421 4.9e-50 201.4 124 77.4
BcaB03g15927 Brassica carinata HOM05D004443 ORTHO05D005421 1.1e-49 200.3 107 93.5
PSO017G0128 Papaver somniferum HOM05D004443 ORTHO05D005421 4.6e-48 194.9 149 64.4
SEGI_02491 Sequoiadendron giganteum HOM05D004443 ORTHO05D005421 1.0e-47 193.7 124 72.6
Os03g0704400 Oryza sativa ssp. japonica HOM05D004443 ORTHO05D005421 1.1e-46 190.3 124 74.2
Haze_00499 Corylus avellana HOM05D004443 ORTHO05D005421 2.7e-40 169.1 92 88.0
SMO367G0158 Selaginella moellendorffii HOM05D004443 ORTHO05D005421 9.3e-33 144.1 138 58.0
AagrBONN_evm.TU.Sc2ySwM_117.523 Anthoceros agrestis HOM05D004443 ORTHO05D005421 2.1e-32 142.9 138 57.2
Pp3c16_20900 Physcomitrium patens HOM05D004443 ORTHO05D005421 3.0e-31 139.0 125 59.2
Pp3c6_320 Physcomitrium patens HOM05D004443 ORTHO05D005421 2.5e-30 136.0 125 56.8
Mapoly0042s0023 Marchantia polymorpha HOM05D004443 ORTHO05D005421 2.8e-29 132.5 136 52.2
vmacro12536 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 9.3e-25 117.5 149 45.6
Phvul.008G166700 Phaseolus vulgaris HOM05D004443 ORTHO05D005421 3.5e-24 115.5 66 84.8
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 3.5e-24 115.5 62 88.7
Zm00001eb054400 Zea mays HOM05D004443 ORTHO05D005421 6.0e-24 114.8 63 85.7
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 1.4e-20 103.6 63 73.0
MCO15G651 Micromonas commoda HOM05D004443 ORTHO05D005421 6.5e-18 94.7 135 40.7
CBR_g31292 Chara braunii HOM05D001539 ORTHO05D000937 5.5e-17 91.7 120 45.0
Cre07.g341700 Chlamydomonas reinhardtii HOM05D004443 ORTHO05D005421 3.5e-16 89.0 103 44.7
PRCOL_00006669 Prasinoderma coloniale HOM05D004443 ORTHO05D005421 3.5e-16 89.0 107 46.7
Thecc.08G119100 Theobroma cacao HOM05D004443 ORTHO05D005421 2.9e-10 69.3 40 85.0


User provided reference genes

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