Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 7.3e-253 876.7 432 100.0
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 7.3e-253 876.7 432 100.0
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 7.3e-253 876.7 432 100.0
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 1.9e-240 835.5 432 94.9
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 2.7e-239 831.6 432 94.2
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 9.9e-234 813.1 432 92.4
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 1.1e-216 756.5 435 85.7
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 4.2e-216 754.6 440 85.7
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 4.3e-213 744.6 442 83.9
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 2.7e-207 725.3 432 82.6
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.8e-206 722.6 432 82.6
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 5.1e-206 721.1 432 82.6
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 2.8e-204 715.3 429 81.6
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 2.8e-204 715.3 429 81.6
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 2.8e-204 715.3 429 81.6
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 4.8e-204 714.5 432 80.3
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 2.4e-203 712.2 433 81.1
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 1.1e-192 676.8 435 76.3
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.6e-159 566.6 435 65.3
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 1.4e-158 563.5 438 65.3
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 8.3e-156 554.3 429 65.3
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.3e-153 546.2 431 64.0
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 2.3e-153 546.2 435 63.0
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 4.3e-152 542.0 437 62.0
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 7.3e-152 541.2 428 61.7
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.2e-151 540.4 434 62.7
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.2e-151 540.4 430 62.3
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 2.1e-151 539.7 439 62.0
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 1.8e-150 536.6 429 62.2
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 4.0e-150 535.4 435 61.1
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 6.8e-150 534.6 435 62.8
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 6.8e-150 534.6 428 61.9
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 6.8e-150 534.6 432 62.0
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 2.0e-149 533.1 342 72.8
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 2.0e-149 533.1 432 62.7
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 9.8e-149 530.8 342 72.5
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 1.7e-148 530.0 437 62.7
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 2.9e-148 529.3 460 62.0
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 6.4e-148 528.1 433 62.1
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.4e-147 526.9 347 71.5
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 4.1e-147 525.4 364 68.1
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 5.4e-147 525.0 430 60.5
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 5.4e-147 525.0 348 70.1
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 9.2e-147 524.2 347 71.2
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 9.2e-147 524.2 358 69.3
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 9.2e-147 524.2 358 69.6
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.2e-146 523.9 428 60.7
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 1.6e-146 523.5 342 71.1
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 7.8e-146 521.2 428 60.0
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 7.8e-146 521.2 347 71.2
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-145 520.4 446 58.7
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 1.7e-145 520.0 425 61.2
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 2.3e-145 519.6 436 60.6
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.9e-145 518.8 422 61.6
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 6.6e-145 518.1 428 60.0
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 1.5e-144 516.9 417 62.6
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 1.9e-144 516.5 428 61.0
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 1.9e-144 516.5 358 67.6
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 2.5e-144 516.2 456 57.5
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 4.3e-144 515.4 428 60.5
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 5.6e-144 515.0 420 63.3
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 5.6e-144 515.0 432 60.6
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.2e-143 513.8 356 67.7
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.8e-143 512.7 448 58.7
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 2.8e-143 512.7 426 61.5
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 6.2e-143 511.5 432 60.2
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 3.1e-142 509.2 428 60.5
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 6.8e-142 508.1 428 61.9
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 8.9e-142 507.7 425 60.7
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.5e-141 506.9 342 69.9
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.0e-141 506.5 441 58.7
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 2.6e-141 506.1 354 66.9
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 3.4e-141 505.8 427 60.2
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 4.4e-141 505.4 354 66.7
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 5.8e-141 505.0 428 60.0
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 7.5e-141 504.6 426 60.8
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 7.5e-141 504.6 401 62.6
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 1.3e-140 503.8 426 57.5
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 1.7e-140 503.4 440 58.6
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.7e-140 503.4 422 60.0
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 1.1e-139 500.7 349 66.5
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 4.1e-139 498.8 429 58.0
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 7.1e-139 498.0 445 57.3
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 9.2e-139 497.7 423 60.3
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 4.6e-138 495.4 423 59.8
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 4.6e-138 495.4 437 58.1
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 4.6e-138 495.4 422 59.7
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 7.8e-138 494.6 402 61.2
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 1.7e-137 493.4 423 59.3
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 1.1e-136 490.7 431 58.0
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 1.1e-136 490.7 349 65.3
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.1e-136 490.7 432 57.2
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.5e-136 490.3 425 57.6
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 1.5e-136 490.3 421 57.2
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 3.3e-136 489.2 454 56.2
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 4.3e-136 488.8 432 57.2
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 5.6e-136 488.4 348 65.5
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 7.3e-136 488.0 437 57.4
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 2.1e-135 486.5 428 56.1
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 2.8e-135 486.1 366 64.5
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 3.6e-135 485.7 444 57.4
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 1.1e-134 484.2 347 64.6
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 6.8e-134 481.5 424 56.1
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 6.8e-134 481.5 425 56.0
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 3.4e-133 479.2 429 58.0
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 4.4e-133 478.8 352 63.9
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.8e-133 478.4 424 55.9
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 7.6e-133 478.0 423 57.2
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 7.6e-133 478.0 431 56.8
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 1.7e-132 476.9 333 67.0
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 2.2e-132 476.5 424 57.5
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.8e-132 475.7 432 56.2
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.4e-131 473.0 434 56.0
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 1.2e-130 470.7 357 60.8
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.3e-129 467.2 424 55.4
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 1.1e-128 464.2 317 71.3
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 9.6e-128 461.1 440 56.8
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 4.8e-127 458.8 425 55.8
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 4.8e-127 458.8 416 57.9
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 6.2e-127 458.4 421 55.1
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 6.9e-126 454.9 425 55.5
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 2.6e-125 453.0 411 56.7
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 4.4e-125 452.2 426 54.7
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 7.6e-125 451.4 424 55.0
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 1.7e-124 450.3 244 85.7
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-123 447.6 425 54.1
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 9.3e-123 444.5 426 52.3
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 9.3e-123 444.5 348 60.1
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 1.6e-122 443.7 412 55.8
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 2.7e-122 443.0 429 54.3
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 6.0e-122 441.8 419 54.4
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-121 440.3 418 53.6
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 5.1e-121 438.7 414 53.9
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-120 437.6 426 54.0
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 7.3e-120 434.9 431 51.0
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 4.8e-119 432.2 417 53.2
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 4.5e-117 425.6 289 69.2
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 4.3e-112 409.1 341 57.5
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.1e-110 402.9 341 56.9
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.9e-107 393.7 378 52.1
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 5.1e-105 385.6 250 70.8
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 2.5e-104 383.3 388 50.8
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 7.4e-104 381.7 340 54.1
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.3e-103 380.9 340 55.3
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 2.8e-103 379.8 340 54.7
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 2.6e-101 373.2 435 49.2
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 1.7e-100 370.5 370 49.2
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 4.2e-99 365.9 305 57.0
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 1.2e-98 364.4 342 52.3
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 5.1e-97 359.0 251 64.9
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 1.3e-92 344.4 243 65.4
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 7.9e-90 335.1 346 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 3.0e-89 333.2 340 48.8
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 2.2e-87 327.0 344 47.1
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 2.2e-87 327.0 338 48.5
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 4.8e-87 325.9 236 63.1
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 1.0e-84 318.2 388 44.8
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 8.5e-84 315.1 299 59.5
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 8.5e-84 315.1 350 46.9
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 4.4e-80 302.8 236 58.1
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.5e-75 287.0 298 48.7
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 8.0e-74 282.0 347 40.9
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 2.3e-73 280.4 241 53.5
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.0e-72 277.3 342 43.3
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.6e-72 276.9 351 41.6
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.1e-70 271.6 339 41.9
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.4e-70 270.4 343 39.9
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.2e-69 268.1 415 38.3
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.4e-62 243.8 342 37.4
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 1.6e-58 231.1 393 35.9
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 7.5e-40 169.1 152 57.2
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 4.3e-35 153.3 154 51.9
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 2.6e-32 144.1 421 27.8
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.3e-23 115.2 85 58.8
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 4.6e-21 106.7 114 43.9
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 3.3e-19 100.5 121 42.1
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 8.1e-18 95.9 77 51.9
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.2e-15 87.8 131 45.8
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.4e-14 85.1 100 40.0
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 7.3e-11 72.8 87 43.7
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.1e-06 58.9 67 32.8
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.2e-06 57.0 36 66.7


User provided reference genes

Program Settings