Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 1.6e-37 158.7 68 100.0
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 1.6e-37 158.7 68 100.0
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 1.6e-37 158.7 68 100.0
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 1.6e-37 158.7 68 100.0
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 1.6e-37 158.7 68 100.0
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 9.7e-35 149.4 68 97.1
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 2.2e-34 148.3 66 98.5
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 4.8e-34 147.1 67 97.0
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 1.8e-33 145.2 67 95.5
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 3.1e-33 144.4 66 95.5
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 3.1e-33 144.4 66 95.5
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 7.0e-33 143.3 67 94.0
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 7.0e-33 143.3 67 94.0
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 2.0e-32 141.7 67 94.0
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 2.0e-32 141.7 67 92.5
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.6e-32 141.4 60 98.3
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 6.5e-31 136.7 69 89.9
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 6.5e-31 136.7 69 89.9
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 6.5e-31 136.7 69 89.9
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 1.9e-30 135.2 58 98.3
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 2.5e-30 134.8 67 92.5
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 2.7e-29 131.3 67 85.1
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 8.0e-29 129.8 69 79.7
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 1.4e-28 129.0 66 81.8
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 3.0e-28 127.9 65 78.5
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 3.0e-28 127.9 65 78.5
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 3.0e-28 127.9 65 78.5
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 3.0e-28 127.9 65 78.5
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 3.9e-28 127.5 62 83.9
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.1e-27 125.9 66 80.3
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.5e-27 125.6 70 77.1
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 2.0e-27 125.2 65 78.5
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.6e-27 124.8 70 75.7
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 7.4e-27 123.2 68 75.0
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 7.4e-27 123.2 62 79.0
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 7.4e-27 123.2 65 73.8
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 9.7e-27 122.9 69 76.8
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 9.7e-27 122.9 71 76.1
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.3e-26 122.5 65 76.9
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 1.7e-26 122.1 69 73.9
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 2.2e-26 121.7 65 75.4
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 2.8e-26 121.3 62 79.0
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 2.8e-26 121.3 66 75.8
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 3.7e-26 120.9 68 76.5
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 3.7e-26 120.9 68 76.5
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 3.7e-26 120.9 66 75.8
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 4.8e-26 120.6 62 79.0
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 6.3e-26 120.2 72 75.0
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 6.3e-26 120.2 65 75.4
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.1e-25 119.4 71 74.6
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.1e-25 119.4 68 75.0
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.1e-25 119.4 65 73.8
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 1.8e-25 118.6 69 71.0
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 1.8e-25 118.6 67 76.1
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.8e-25 118.6 70 68.6
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 2.4e-25 118.2 68 73.5
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 3.1e-25 117.9 59 79.7
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.1e-25 117.5 68 73.5
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.3e-25 117.1 68 73.5
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 5.3e-25 117.1 68 73.5
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.0e-25 116.7 68 75.0
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 7.0e-25 116.7 69 72.5
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 9.1e-25 116.3 67 73.1
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 9.1e-25 116.3 69 69.6
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 1.6e-24 115.5 65 73.8
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.6e-24 115.5 59 79.7
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 2.0e-24 115.2 65 73.8
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.6e-24 114.8 59 79.7
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 3.5e-24 114.4 64 73.4
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 3.5e-24 114.4 63 76.2
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 3.5e-24 114.4 63 74.6
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 3.5e-24 114.4 65 73.8
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 4.5e-24 114.0 59 72.9
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 5.9e-24 113.6 71 70.4
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 1.3e-23 112.5 63 71.4
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 1.3e-23 112.5 63 71.4
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.2e-23 111.7 65 67.7
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.2e-23 111.7 65 67.7
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 2.9e-23 111.3 65 72.3
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 3.8e-23 110.9 65 69.2
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 3.8e-23 110.9 61 68.9
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 5.0e-23 110.5 65 69.2
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 5.0e-23 110.5 65 72.3
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 6.5e-23 110.2 67 67.2
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 6.5e-23 110.2 64 70.3
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.5e-22 108.2 65 66.2
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 2.5e-22 108.2 56 75.0
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 3.2e-22 107.8 61 68.9
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 3.2e-22 107.8 71 67.6
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 3.2e-22 107.8 55 74.5
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 2.7e-21 104.8 71 64.8
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 3.6e-21 104.4 46 97.8
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 3.6e-21 104.4 59 72.9
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 6.1e-21 103.6 55 70.9
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 1.8e-20 102.1 63 69.8
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 4.0e-20 100.9 62 69.4
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.4e-19 97.8 76 57.9
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 4.4e-19 97.4 67 59.7
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 9.7e-19 96.3 59 69.5
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 2.8e-18 94.7 58 63.8
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 4.8e-18 94.0 64 59.4
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 8.3e-18 93.2 47 83.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 2.4e-17 91.7 60 70.0
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 3.1e-17 91.3 48 75.0
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 3.1e-17 91.3 48 75.0
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 3.1e-17 91.3 47 78.7
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 1.6e-16 89.0 47 74.5
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.2e-15 85.1 49 67.3
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 2.9e-15 84.7 48 68.8
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 8.5e-15 83.2 51 70.6
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 1.1e-14 82.8 51 68.6
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 7.2e-14 80.1 48 66.7
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 2.0e-11 72.0 47 70.2
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 1.4e-09 65.9 49 61.2
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 5.4e-09 63.9 48 58.3
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 2.0e-08 62.0 35 71.4
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 3.5e-08 61.2 38 71.1
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 2.9e-07 58.2 32 71.9
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 3.8e-07 57.8 32 71.9
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 6.6e-07 57.0 31 67.7
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.5e-06 55.8 31 64.5
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.5e-06 55.8 31 64.5
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.5e-06 55.8 33 72.7
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.9e-06 55.5 34 58.8
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 2.5e-06 55.1 31 64.5
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 4.2e-06 54.3 33 66.7
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 7.2e-06 53.5 35 60.0
MCO07G568 Micromonas commoda HOM05D006241 ORTHO05D007842 9.5e-06 53.1 59 39.0


User provided reference genes

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