Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 5.4e-127 457.6 222 100.0
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-124 449.9 222 98.6
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-124 449.9 222 98.6
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 4.0e-122 441.4 240 91.7
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 6.7e-117 424.1 222 92.8
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 8.7e-117 423.7 241 88.0
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-107 393.3 219 87.2
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-98 363.6 219 79.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 4.1e-98 361.7 219 78.5
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.3e-98 361.3 217 79.7
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-97 360.1 219 78.1
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.2e-97 360.1 219 79.0
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.4e-95 353.2 217 77.4
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 9.4e-95 350.5 217 77.4
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 7.9e-94 347.4 219 76.3
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.3e-93 345.9 221 77.4
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.8e-90 336.3 213 76.5
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.1e-90 335.1 251 67.3
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 4.4e-84 315.1 213 71.8
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.9e-81 304.7 219 65.3
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 7.7e-81 304.3 218 65.1
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 2.2e-80 302.8 218 64.2
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.9e-80 302.4 218 65.1
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 8.5e-80 300.8 213 66.2
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 8.5e-80 300.8 218 63.8
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 4.2e-79 298.5 215 65.1
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-79 298.5 213 65.7
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 7.2e-79 297.7 213 65.7
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 6.1e-78 294.7 217 65.9
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.0e-77 293.9 207 65.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-77 293.1 214 65.4
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.0e-76 289.7 228 63.2
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 6.5e-72 274.6 209 63.6
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 9.4e-71 270.8 211 61.1
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.4e-69 266.9 218 61.5
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 6.8e-69 264.6 210 60.5
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 7.5e-68 261.2 201 62.2
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 9.8e-68 260.8 216 59.3
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 9.8e-68 260.8 207 61.8
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.3e-67 260.4 217 59.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.7e-67 260.0 220 60.0
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.7e-67 260.0 222 60.4
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 6.3e-67 258.1 216 57.9
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 6.3e-67 258.1 219 56.2
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.1e-66 257.3 207 60.9
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.8e-66 256.5 211 58.3
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 2.4e-66 256.1 211 58.3
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 2.4e-66 256.1 209 58.4
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 4.1e-66 255.4 207 63.3
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 4.1e-66 255.4 219 57.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 4.1e-66 255.4 212 57.5
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 5.4e-66 255.0 216 56.0
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.6e-65 253.4 216 59.3
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 3.5e-65 252.3 204 58.8
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 5.9e-65 251.5 217 57.1
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.3e-64 250.4 210 60.0
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.7e-64 250.0 205 58.5
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 2.2e-64 249.6 209 57.9
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 2.2e-64 249.6 238 53.8
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.9e-64 249.2 215 55.8
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 3.8e-64 248.8 210 59.5
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.8e-64 248.8 213 55.4
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.0e-64 248.4 167 68.3
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 5.0e-64 248.4 205 58.5
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 6.5e-64 248.1 200 61.0
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 1.5e-63 246.9 213 57.7
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 2.5e-63 246.1 212 56.6
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 7.2e-63 244.6 216 56.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 6.1e-62 241.5 203 55.2
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 6.1e-62 241.5 200 58.0
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 6.1e-62 241.5 210 57.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.1e-62 241.5 196 58.7
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.1e-62 241.5 196 58.7
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.1e-62 241.5 212 56.1
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.0e-61 240.7 210 54.3
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.3e-61 239.6 211 55.5
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 2.3e-61 239.6 203 56.2
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.8e-61 238.0 197 58.4
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 6.8e-61 238.0 208 54.8
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.8e-61 237.7 216 53.7
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.2e-60 237.3 210 55.7
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.6e-60 236.1 196 58.7
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.6e-60 236.1 196 58.2
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.6e-60 236.1 196 58.2
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 2.6e-60 236.1 206 54.4
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 4.4e-60 235.3 199 55.3
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 5.7e-60 235.0 140 85.7
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.5e-60 234.6 223 53.4
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.3e-59 233.8 211 55.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.3e-59 231.1 210 56.2
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.3e-59 231.1 215 54.9
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 8.3e-59 231.1 216 52.8
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 8.3e-59 231.1 205 56.6
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 8.3e-59 231.1 196 57.1
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.1e-58 230.7 216 53.7
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-58 230.3 190 56.8
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.8e-58 229.9 201 54.2
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.8e-58 229.9 215 50.7
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.4e-58 229.6 212 53.8
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 2.4e-58 229.6 196 56.1
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 4.1e-58 228.8 213 51.2
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.4e-58 228.4 213 54.5
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 7.0e-58 228.0 213 53.5
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.7e-57 226.1 221 52.0
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.7e-57 226.1 208 53.4
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.7e-57 226.1 212 53.8
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 5.9e-57 224.9 196 53.6
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 7.7e-57 224.6 197 53.8
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.0e-56 224.2 172 59.3
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.7e-56 223.4 188 56.9
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 2.3e-56 223.0 206 52.9
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 3.8e-56 222.2 213 51.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.0e-56 221.9 216 53.7
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.3e-55 218.8 212 50.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 7.3e-55 218.0 218 50.5
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.1e-54 216.5 206 50.5
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.6e-54 215.7 189 55.0
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 4.7e-54 215.3 213 52.1
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 6.1e-54 214.9 209 48.8
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 4.0e-53 212.2 210 51.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.5e-52 210.3 210 50.0
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 2.0e-52 209.9 211 47.9
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 5.7e-52 208.4 212 47.2
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.7e-52 208.4 216 48.1
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.8e-50 203.4 221 48.9
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 5.4e-50 201.8 214 47.7
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 9.2e-50 201.1 189 52.4
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 5.9e-49 198.4 212 46.2
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.0e-48 197.6 116 81.9
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 5.0e-48 195.3 173 57.2
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.5e-47 193.7 194 48.5
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 8.0e-46 188.0 194 46.9
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.0e-45 187.6 196 45.4
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.2e-45 185.3 208 44.7
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.2e-44 184.1 194 45.9
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.5e-44 183.7 196 49.0
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 2.0e-44 183.3 196 45.9
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 7.5e-44 181.4 197 46.2
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 9.8e-44 181.0 196 45.9
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.3e-43 180.6 205 45.4
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.2e-43 179.9 110 75.5
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 8.3e-43 177.9 175 54.3
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.5e-39 166.4 92 83.7
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 5.6e-39 165.2 171 47.4
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 4.0e-37 159.1 216 44.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.2e-37 158.7 201 42.3
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.0e-36 156.8 191 41.4
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 5.8e-36 155.2 139 54.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-34 150.2 110 65.5
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 9.2e-34 147.9 110 64.5
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.6e-33 147.1 120 60.0
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.7e-33 146.4 127 53.5
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.5e-31 140.6 221 38.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 2.5e-31 139.8 216 35.6
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 5.6e-31 138.7 173 45.1
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-30 137.5 101 64.4
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.6e-30 137.1 111 61.3
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.1e-29 134.4 204 38.7
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.9e-29 131.3 128 49.2
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.4e-28 129.0 152 47.4
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.6e-28 128.3 99 62.6
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 3.8e-27 125.9 143 48.3
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.9e-26 123.6 116 53.4
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.0e-24 117.9 134 44.8
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 2.5e-23 113.2 95 56.8
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 9.6e-23 111.3 87 59.8
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-22 110.9 85 61.2
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-22 110.5 63 82.5
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.2e-20 104.4 211 33.2
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-18 97.8 77 59.7
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.4e-18 97.4 77 58.4
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 3.2e-18 96.3 113 53.1
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 9.3e-18 94.7 149 35.6
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.6e-17 92.4 107 42.1
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.3e-16 90.1 85 44.7
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.3e-16 90.1 86 55.8
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.2e-10 69.7 64 56.2
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 9.3e-10 68.2 67 56.7
BolC3t21388H Brassica oleracea HOM05D000901 ORTHO05D032089 5.1e-08 62.4 46 67.4


User provided reference genes

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