Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.2e-103 379.8 342 100.0
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.4e-94 350.5 342 96.8
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 5.0e-55 219.2 273 94.5
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.0e-44 184.9 273 88.6
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 7.5e-43 178.7 273 89.7
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 2.9e-42 176.8 275 85.1
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.5e-38 164.5 275 82.2
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.3e-38 163.3 254 83.9
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.6e-29 134.4 254 77.6
CARHR068960 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.2e-27 128.3 229 81.2
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.1e-21 107.5 254 75.6
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 3.8e-18 96.7 254 72.8
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.9e-17 94.4 256 72.3
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 2.4e-17 94.0 257 72.0
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 5.4e-17 92.8 257 72.8
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 9.2e-17 92.0 254 72.4
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.3e-15 87.4 246 69.9
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.0e-15 87.0 251 74.1
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.0e-15 87.0 71 81.7
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.5e-14 84.7 71 78.9
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 2.5e-14 84.0 251 73.3
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 5.6e-14 82.8 71 77.5
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.1e-13 80.9 254 73.2
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.8e-13 80.5 52 73.1
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.1e-13 79.0 52 75.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.4e-12 78.2 52 71.2
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.4e-12 78.2 52 69.2
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.8e-12 77.8 71 73.2
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.4e-12 77.4 52 69.2
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.4e-12 77.4 52 71.2
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 4.0e-12 76.6 52 69.2
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 4.0e-12 76.6 254 71.3
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 5.3e-12 76.3 52 69.2
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 5.3e-12 76.3 71 76.1
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 5.3e-12 76.3 52 69.2
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 5.3e-12 76.3 52 69.2
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 5.3e-12 76.3 52 69.2
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 5.3e-12 76.3 52 69.2
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 6.9e-12 75.9 52 65.4
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 9.0e-12 75.5 52 69.2
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 9.0e-12 75.5 52 67.3
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 9.0e-12 75.5 52 69.2
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 9.0e-12 75.5 52 67.3
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 9.0e-12 75.5 52 67.3
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 9.0e-12 75.5 52 67.3
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.2e-11 75.1 52 67.3
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.2e-11 75.1 52 69.2
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 1.2e-11 75.1 52 67.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.2e-11 75.1 52 67.3
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.5e-11 74.7 52 67.3
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.5e-11 74.7 52 67.3
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.0e-11 74.3 52 65.4
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.0e-11 74.3 52 65.4
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.0e-11 74.3 69 72.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 2.0e-11 74.3 52 65.4
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 2.0e-11 74.3 52 65.4
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 2.0e-11 74.3 52 65.4
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.0e-11 74.3 52 65.4
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 2.0e-11 74.3 52 65.4
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.0e-11 74.3 52 65.4
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 2.6e-11 73.9 50 68.0
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 3.4e-11 73.6 52 65.4
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.4e-11 73.6 52 65.4
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 3.4e-11 73.6 52 67.3
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 3.4e-11 73.6 52 67.3
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 63.5
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 65.4
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 65.4
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 65.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 65.4
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 65.4
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 65.4
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 67.3
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 4.4e-11 73.2 52 67.3
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 5.8e-11 72.8 52 65.4
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 5.8e-11 72.8 250 73.2
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 5.8e-11 72.8 52 65.4
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 7.6e-11 72.4 52 63.5
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 7.6e-11 72.4 281 65.5
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 7.6e-11 72.4 52 71.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 7.6e-11 72.4 52 65.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.3e-10 71.6 52 65.4
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.3e-10 71.6 50 66.0
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.3e-10 71.6 52 69.2
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.7e-10 71.2 52 63.5
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.7e-10 71.2 50 66.0
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.7e-10 71.2 52 65.4
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 2.2e-10 70.9 77 50.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.9e-10 70.5 50 66.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.9e-10 69.7 52 61.5
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 6.4e-10 69.3 52 63.5
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 8.4e-10 68.9 52 59.6
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.1e-09 68.6 47 66.0
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.1e-09 68.6 52 61.5
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.1e-09 68.6 52 61.5
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.4e-09 68.2 52 65.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.9e-09 67.8 51 70.6
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 1.9e-09 67.8 51 70.6
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.4e-09 67.4 52 61.5
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 2.4e-09 67.4 52 61.5
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 2.4e-09 67.4 52 61.5
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.4e-09 67.4 52 59.6
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 4.2e-09 66.6 52 59.6
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.2e-09 66.6 51 62.7
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.2e-09 66.6 51 62.7
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 5.4e-09 66.2 71 67.6
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.1e-09 65.9 53 62.3
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 9.3e-09 65.5 50 64.0
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.2e-08 65.1 53 64.2
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.6e-08 64.7 51 60.8
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 2.7e-08 63.9 253 69.6
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.6e-08 63.2 53 62.3
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 6.0e-08 62.8 274 60.6
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 6.0e-08 62.8 53 60.4
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 7.8e-08 62.4 52 61.5
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.0e-07 62.0 52 59.6
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.0e-07 62.0 53 60.4
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.0e-07 62.0 52 61.5
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.3e-07 61.6 53 60.4
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.3e-07 61.6 53 62.3
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.3e-07 61.6 44 65.9
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.7e-07 61.2 53 62.3
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.7e-07 61.2 53 62.3
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.7e-07 61.2 44 63.6
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.7e-07 61.2 61 54.1
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 2.3e-07 60.8 52 63.5
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-07 60.8 52 63.5
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-07 60.8 52 63.5
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-07 60.8 52 63.5
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 3.0e-07 60.5 48 58.3
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 3.0e-07 60.5 261 67.4
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.0e-07 60.5 52 61.5
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 3.9e-07 60.1 52 63.5
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.1e-07 59.7 57 52.6
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-07 59.7 44 65.9
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.7e-07 58.9 52 61.5
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 8.7e-07 58.9 53 58.5
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.1e-06 58.5 58 55.2
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 1.1e-06 58.5 32 71.9
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.1e-06 58.5 53 58.5
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.9e-06 57.8 52 57.7
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.5e-06 57.4 53 58.5
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 2.5e-06 57.4 52 57.7
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 2.5e-06 57.4 52 59.6
Nitab4.5_0001154g0030 Nicotiana tabacum HOM05D061411 ORTHO05D004724 4.3e-06 56.6 32 71.9
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 7.3e-06 55.8 53 56.6


User provided reference genes

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