Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 1.6e-225 786.2 545 100.0
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 1.8e-184 649.8 548 88.5
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 7.7e-175 617.8 548 85.6
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 3.6e-156 555.8 566 77.0
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 6.8e-155 551.6 608 74.5
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 1.2e-154 550.8 610 74.3
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 4.8e-100 369.4 560 53.6
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 8.2e-92 342.0 513 56.3
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 1.4e-91 341.3 554 55.4
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 5.3e-91 339.3 597 57.5
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 5.1e-86 322.8 551 55.0
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 6.7e-78 295.8 549 52.8
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 2.4e-75 287.3 582 47.9
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 3.0e-54 217.2 236 53.8
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 2.0e-42 177.9 248 46.8
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 5.9e-42 176.4 212 47.6
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 5.9e-42 176.4 212 47.6
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.7e-41 174.9 206 47.6
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 9.5e-40 169.1 212 46.2
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.2e-39 168.7 237 45.1
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 3.6e-39 167.2 216 45.8
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 3.4e-37 160.6 230 45.2
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 7.5e-37 159.5 226 39.8
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 9.8e-37 159.1 235 42.6
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.2e-36 157.9 199 48.7
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.1e-35 155.6 209 45.9
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.9e-35 154.8 258 41.9
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 3.2e-35 154.1 236 40.3
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 5.4e-35 153.3 219 42.0
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 7.0e-35 152.9 219 42.9
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 9.2e-35 152.5 205 45.4
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 1.2e-34 152.1 200 45.0
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 4.6e-34 150.2 235 41.7
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 6.0e-34 149.8 176 47.2
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 6.0e-34 149.8 251 40.6
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 6.0e-34 149.8 202 44.1
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 7.8e-34 149.4 240 40.8
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 3.9e-33 147.1 234 39.3
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 1.1e-32 145.6 240 41.2
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 1.1e-32 145.6 225 42.2
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 2.5e-32 144.4 210 41.9
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 3.3e-32 144.1 250 40.8
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 9.5e-32 142.5 205 42.9
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.6e-31 141.7 205 42.4
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.0e-31 139.4 234 38.9
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 1.4e-30 138.7 183 46.4
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 2.3e-30 137.9 235 39.1
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.2e-30 136.7 241 36.5
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 6.8e-30 136.3 205 41.0
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.8e-30 136.3 225 38.7
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 1.5e-29 135.2 240 38.8
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.4e-29 133.7 232 37.1
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 7.5e-29 132.9 200 39.0
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 2.2e-28 131.3 224 37.5
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 3.7e-28 130.6 208 38.5
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 4.9e-28 130.2 235 37.4
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 4.9e-28 130.2 213 38.0
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 8.3e-28 129.4 224 38.4
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.1e-27 129.0 187 43.3
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.1e-27 129.0 214 38.3
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 2.4e-27 127.9 223 37.2
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 3.2e-27 127.5 227 37.0
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 5.4e-27 126.7 240 36.7
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.2e-26 125.6 179 41.3
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 2.1e-26 124.8 227 37.0
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.1e-26 124.8 219 36.5
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 2.7e-26 124.4 217 38.2
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 4.6e-26 123.6 227 37.0
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 4.6e-26 123.6 241 35.3
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.7e-25 121.7 254 34.3
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 8.6e-25 119.4 256 34.8
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 8.6e-25 119.4 176 39.2
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 8.6e-25 119.4 200 38.5
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 1.9e-24 118.2 207 39.6
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 7.3e-24 116.3 177 37.9
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 2.1e-23 114.8 252 32.5
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.1e-23 114.8 195 40.0
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 8.1e-23 112.8 219 38.4
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 3.1e-22 110.9 225 34.2
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 4.0e-22 110.5 177 40.7
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 5.2e-22 110.2 245 35.5
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 6.8e-22 109.8 229 33.2
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 7.6e-21 106.3 260 32.3
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 1.3e-20 105.5 173 38.2
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 2.9e-20 104.4 207 35.7
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 2.9e-20 104.4 127 45.7
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 8.3e-20 102.8 234 34.6
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.9e-19 101.7 232 32.8
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.2e-19 100.9 232 32.8
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 4.1e-19 100.5 183 35.5
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 5.4e-19 100.1 241 34.4
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 7.1e-19 99.8 214 36.4
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 9.2e-19 99.4 180 38.9
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.2e-18 99.0 199 32.7
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 2.1e-18 98.2 208 33.7
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 3.5e-18 97.4 173 35.8
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 4.6e-18 97.1 252 29.8
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 4.6e-18 97.1 220 32.7
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.0e-17 95.9 169 37.9
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 2.3e-17 94.7 220 32.7
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 3.0e-17 94.4 231 33.3
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 8.6e-17 92.8 168 37.5
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.5e-16 92.0 234 34.2
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.9e-16 91.7 179 35.2
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.5e-16 91.3 168 35.1
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 5.6e-16 90.1 189 34.4
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 7.3e-16 89.7 241 31.5
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 9.6e-16 89.4 198 35.4
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 8.1e-15 86.3 133 42.1
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 5.2e-14 83.6 196 35.2
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.8e-14 83.2 210 34.8
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 1.7e-12 78.6 169 35.5
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.9e-11 75.1 179 31.8
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 3.2e-11 74.3 163 35.0
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.2e-11 74.3 207 32.4
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 5.4e-11 73.6 110 42.7
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.5e-10 70.9 225 28.4
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.6e-07 62.0 135 37.0
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 8.1e-07 59.7 155 29.7
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.1e-06 59.3 119 33.6
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.1e-06 59.3 155 30.3
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.8e-06 58.5 106 36.8
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 6.9e-06 56.6 123 32.5
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 6.9e-06 56.6 113 33.6
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 9.0e-06 56.2 155 29.0


User provided reference genes

Program Settings