Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 1.3e-84 316.6 196 100.0
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 1.3e-84 316.6 196 100.0
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 3.3e-83 312.0 196 99.0
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 4.3e-83 311.6 196 99.0
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 2.8e-82 308.9 196 98.0
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 1.0e-76 290.4 199 93.0
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 1.0e-76 290.4 199 93.0
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 3.9e-76 288.5 199 92.0
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 3.9e-76 288.5 196 92.3
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 3.3e-75 285.4 199 91.0
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.1e-73 278.9 199 89.4
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 1.2e-69 266.9 197 86.3
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 4.6e-69 265.0 197 86.8
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 2.3e-68 262.7 197 85.8
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 9.5e-67 257.3 198 83.8
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.1e-65 253.8 199 82.9
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 1.3e-52 210.3 199 69.8
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 7.3e-51 204.5 134 100.0
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.7e-50 201.8 198 70.2
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 3.1e-49 199.1 200 68.5
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 1.5e-48 196.8 183 72.1
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 2.0e-48 196.4 175 76.6
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 3.4e-48 195.7 175 76.0
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 4.4e-48 195.3 196 65.8
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 4.4e-48 195.3 196 65.8
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 4.4e-48 195.3 200 69.0
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 5.8e-48 194.9 175 76.0
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 7.6e-48 194.5 200 69.5
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.3e-47 193.7 196 65.8
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 1.7e-47 193.4 206 67.0
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 2.2e-47 193.0 189 68.8
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 2.9e-47 192.6 201 68.2
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 4.9e-47 191.8 197 66.5
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 4.9e-47 191.8 157 79.0
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 6.4e-47 191.4 190 68.4
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 8.4e-47 191.0 157 79.6
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 1.1e-46 190.7 189 70.4
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.1e-46 190.7 200 69.0
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 1.4e-46 190.3 175 75.4
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 1.4e-46 190.3 175 72.6
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.4e-46 190.3 200 68.5
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.9e-46 189.9 158 78.5
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 3.2e-46 189.1 158 78.5
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 3.2e-46 189.1 194 66.5
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.2e-46 188.7 194 67.0
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 4.2e-46 188.7 159 77.4
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 9.3e-46 187.6 196 65.8
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 9.3e-46 187.6 175 72.0
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 9.3e-46 187.6 158 77.8
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 9.3e-46 187.6 190 70.5
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 1.2e-45 187.2 204 63.7
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 1.6e-45 186.8 202 65.3
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 1.6e-45 186.8 197 64.5
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 2.1e-45 186.4 197 65.5
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 2.7e-45 186.0 189 70.4
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 2.7e-45 186.0 189 70.4
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 3.5e-45 185.7 180 68.9
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 4.6e-45 185.3 201 66.7
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 4.6e-45 185.3 201 65.7
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.0e-45 184.9 158 76.6
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 7.8e-45 184.5 190 66.3
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.3e-44 183.7 203 64.5
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 1.7e-44 183.3 199 66.3
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.7e-44 183.3 198 65.2
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 3.0e-44 182.6 150 80.7
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 3.0e-44 182.6 176 70.5
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 3.9e-44 182.2 198 64.6
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 3.9e-44 182.2 200 63.0
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 8.7e-44 181.0 159 76.7
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.9e-43 179.9 151 79.5
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 1.9e-43 179.9 149 79.9
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 1.9e-43 179.9 176 68.2
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 2.5e-43 179.5 190 67.4
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 3.3e-43 179.1 148 80.4
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 4.3e-43 178.7 154 77.3
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 7.3e-43 177.9 196 64.3
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 7.3e-43 177.9 175 69.1
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 9.6e-43 177.6 182 68.7
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 9.6e-43 177.6 196 61.2
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 1.3e-42 177.2 194 63.4
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 1.3e-42 177.2 193 65.8
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.3e-42 177.2 174 69.0
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 2.1e-42 176.4 177 67.2
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 2.8e-42 176.0 158 74.7
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 6.2e-42 174.9 198 61.6
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 8.1e-42 174.5 188 65.4
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.8e-41 173.3 175 66.3
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 5.3e-41 171.8 147 78.9
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 5.3e-41 171.8 159 71.7
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 9.0e-41 171.0 160 70.0
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 9.0e-41 171.0 160 70.0
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.5e-40 170.2 149 77.9
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 1.5e-40 170.2 201 62.2
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 2.6e-40 169.5 205 63.4
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 3.4e-40 169.1 156 71.8
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 3.4e-40 169.1 156 72.4
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 7.6e-40 167.9 196 60.2
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 2.9e-39 166.0 157 70.7
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 2.9e-39 166.0 96 90.6
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 2.9e-39 166.0 182 65.4
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 7.1e-38 161.4 174 64.4
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 1.6e-37 160.2 159 69.2
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 3.9e-36 155.6 158 68.4
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 8.7e-36 154.5 175 64.0
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.8e-33 146.7 175 61.1
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 2.4e-33 146.4 180 60.6
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.5e-30 136.3 194 55.2
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 9.3e-30 134.4 196 54.6
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 3.3e-27 125.9 156 59.0
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 4.3e-27 125.6 140 68.6
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 1.1e-25 120.9 110 72.7
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 3.4e-24 115.9 157 57.3
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.2e-22 109.4 66 75.8
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 1.2e-21 107.5 158 54.4
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 6.0e-21 105.1 150 55.3
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 1.3e-20 104.0 161 53.4
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.2e-18 96.7 110 64.5
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 8.2e-18 94.7 156 50.6
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 1.1e-17 94.4 127 49.6
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.4e-09 66.6 81 42.0
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 5.3e-09 65.5 111 49.5


User provided reference genes

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