Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 7.2e-130 467.6 305 100.0
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 6.1e-121 438.0 305 90.8
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 2.2e-118 429.5 306 92.5
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 2.6e-111 406.0 306 91.5
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 1.5e-90 337.0 332 67.8
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 2.3e-88 329.7 252 81.3
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 1.1e-82 310.8 327 64.5
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 2.0e-79 300.1 332 63.9
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 7.6e-79 298.1 337 58.8
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 2.2e-78 296.6 313 63.9
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 6.4e-78 295.0 317 62.1
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 1.3e-75 287.3 314 63.4
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 1.9e-74 283.5 315 63.5
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 2.8e-73 279.6 330 55.8
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 2.6e-71 273.1 321 56.7
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 9.9e-71 271.2 320 61.6
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 1.3e-70 270.8 321 58.6
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 1.1e-69 267.7 321 59.5
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 2.1e-68 263.5 321 56.1
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 1.8e-67 260.4 260 65.4
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 3.0e-67 259.6 332 56.0
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 5.1e-67 258.8 260 66.9
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 7.6e-55 218.4 262 54.6
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 4.9e-54 215.7 289 51.9
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 1.7e-38 164.1 264 45.1
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 3.0e-19 100.1 133 51.9
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 6.7e-19 99.0 271 35.4
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 2.2e-17 94.0 262 33.2
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 3.7e-17 93.2 264 33.3
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 1.1e-16 91.7 272 36.0
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 3.5e-15 86.7 264 34.5
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 7.7e-15 85.5 212 36.3
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.3e-14 84.7 277 33.9
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 5.0e-14 82.8 213 36.6
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 1.1e-13 81.6 264 36.0
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.5e-13 81.3 272 33.8
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 3.2e-13 80.1 278 33.8
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 7.2e-13 79.0 257 33.1
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 7.2e-13 79.0 261 33.3
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 1.2e-12 78.2 272 33.5
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.2e-12 78.2 277 32.5
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 2.7e-12 77.0 259 32.4
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 3.6e-12 76.6 267 31.1
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 8.0e-12 75.5 125 40.8
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 8.0e-12 75.5 255 38.4
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.0e-11 75.1 217 34.6
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 1.0e-11 75.1 207 37.2
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 1.0e-11 75.1 269 30.5
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 1.4e-11 74.7 252 32.9
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.4e-11 74.7 291 34.7
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 1.8e-11 74.3 262 32.8
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 1.8e-11 74.3 262 32.1
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 2.3e-11 73.9 68 60.3
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 2.3e-11 73.9 74 59.5
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 3.0e-11 73.6 268 32.5
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 4.0e-11 73.2 260 33.8
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 4.0e-11 73.2 263 32.3
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 5.2e-11 72.8 264 33.3
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 6.8e-11 72.4 262 31.3
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 6.8e-11 72.4 270 33.3
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 8.8e-11 72.0 150 40.0
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 1.5e-10 71.2 264 33.0
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 1.5e-10 71.2 267 33.0
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 1.5e-10 71.2 260 30.0
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 1.5e-10 71.2 253 31.2
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 3.4e-10 70.1 268 34.0
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 3.4e-10 70.1 251 32.7
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 4.4e-10 69.7 199 35.2
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 5.7e-10 69.3 108 45.4
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 7.5e-10 68.9 103 45.6
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 7.5e-10 68.9 71 54.9
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 7.5e-10 68.9 96 49.0
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 7.5e-10 68.9 85 50.6
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 9.8e-10 68.6 254 32.7
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 1.3e-09 68.2 258 32.2
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 1.3e-09 68.2 255 32.5
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.7e-09 67.8 168 35.7
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.2e-09 67.4 245 32.2
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 2.2e-09 67.4 205 33.2
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 2.8e-09 67.0 228 31.6
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 3.7e-09 66.6 100 47.0
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 3.7e-09 66.6 260 30.4
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.7e-09 66.6 177 36.7
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.7e-09 66.6 245 31.0
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 3.7e-09 66.6 245 31.0
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 3.7e-09 66.6 74 55.4
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 4.8e-09 66.2 88 47.7
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 8.3e-09 65.5 205 32.7
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 8.3e-09 65.5 90 44.4
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 8.3e-09 65.5 89 46.1
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 1.1e-08 65.1 255 32.9
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 1.4e-08 64.7 88 46.6
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.4e-08 64.7 192 35.9
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.8e-08 64.3 268 30.6
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 1.8e-08 64.3 205 32.7
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 1.8e-08 64.3 275 29.8
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.8e-08 64.3 270 28.1
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 1.8e-08 64.3 258 31.4
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 2.4e-08 63.9 87 47.1
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 2.4e-08 63.9 86 50.0
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 2.4e-08 63.9 90 43.3
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.4e-08 63.9 96 43.8
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 2.4e-08 63.9 84 47.6
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.1e-08 63.5 88 46.6
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 3.1e-08 63.5 214 31.8
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 3.1e-08 63.5 242 32.6
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 4.1e-08 63.2 83 50.6
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 5.4e-08 62.8 268 33.2
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 5.4e-08 62.8 255 27.8
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 5.4e-08 62.8 255 27.8
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 5.4e-08 62.8 150 38.0
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 5.4e-08 62.8 279 31.5
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 5.4e-08 62.8 88 48.9
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 7.0e-08 62.4 92 48.9
Lsat_1_v5_gn_4_111160 Lactuca sativa HOM05D006637 ORTHO05D001736 7.0e-08 62.4 65 53.8
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 7.0e-08 62.4 259 32.0
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 9.1e-08 62.0 100 47.0
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 9.1e-08 62.0 254 32.3
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.2e-07 61.6 76 51.3
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 1.2e-07 61.6 196 34.2
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 1.2e-07 61.6 262 29.8
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 1.2e-07 61.6 71 47.9
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.6e-07 61.2 90 47.8
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 2.0e-07 60.8 77 49.4
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 2.0e-07 60.8 89 42.7
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 2.7e-07 60.5 89 46.1
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 2.7e-07 60.5 198 37.9
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 2.7e-07 60.5 221 33.9
Gorai.003G101400 Gossypium raimondii HOM05D006637 ORTHO05D001736 3.5e-07 60.1 189 34.4
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 3.5e-07 60.1 203 33.0
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 3.5e-07 60.1 83 49.4
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 4.5e-07 59.7 95 44.2
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 5.9e-07 59.3 89 46.1
Sc14g0007980 Simmondsia chinensis HOM05D003787 ORTHO05D001736 5.9e-07 59.3 81 46.9
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 5.9e-07 59.3 76 46.1
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 5.9e-07 59.3 262 27.1
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 7.7e-07 58.9 91 44.0
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 7.7e-07 58.9 91 44.0
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 7.7e-07 58.9 91 44.0
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 7.7e-07 58.9 261 30.3
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 7.7e-07 58.9 91 45.1
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 7.7e-07 58.9 255 30.2
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 7.7e-07 58.9 76 46.1
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 7.7e-07 58.9 75 46.7
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 7.7e-07 58.9 267 29.6
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 1.0e-06 58.5 213 33.3
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.0e-06 58.5 53 60.4
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.3e-06 58.2 261 30.3
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 1.3e-06 58.2 258 31.0
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 1.3e-06 58.2 190 33.2
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 1.3e-06 58.2 91 45.1
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.3e-06 58.2 53 56.6
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.3e-06 58.2 227 31.7
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 1.3e-06 58.2 187 33.2
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.3e-06 58.2 96 44.8
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 1.7e-06 57.8 67 52.2
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.7e-06 57.8 277 29.6
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 1.7e-06 57.8 261 34.1
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.3e-06 57.4 84 46.4
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.3e-06 57.4 84 46.4
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 2.3e-06 57.4 95 43.2
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.3e-06 57.4 82 46.3
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 2.9e-06 57.0 69 46.4
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 2.9e-06 57.0 68 48.5
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.9e-06 57.0 70 48.6
Migut.I00333 Erythranthe guttata HOM05D006637 ORTHO05D001736 3.8e-06 56.6 83 44.6
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 5.0e-06 56.2 65 52.3
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.0e-06 56.2 75 49.3
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 5.0e-06 56.2 254 31.1
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 5.0e-06 56.2 259 34.7
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 6.5e-06 55.8 72 47.2
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 6.5e-06 55.8 66 53.0
Gohir.A13G082800 Gossypium hirsutum HOM05D003787 ORTHO05D001736 6.5e-06 55.8 71 47.9
Gohir.D13G082500 Gossypium hirsutum HOM05D003787 ORTHO05D001736 6.5e-06 55.8 71 47.9
Gorai.013G094300 Gossypium raimondii HOM05D003787 ORTHO05D001736 6.5e-06 55.8 71 47.9
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 8.6e-06 55.5 223 30.9
Zm00001eb305470 Zea mays HOM05D003787 ORTHO05D001736 8.6e-06 55.5 74 51.4


User provided reference genes

Program Settings