Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 0.0e+00 1180.6 604 100.0
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.8e-169 600.1 565 64.6
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.8e-167 592.4 564 63.7
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 3.5e-144 516.2 271 97.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.3e-134 483.0 271 94.1
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 2.1e-120 437.2 296 79.7
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 4.5e-83 313.2 282 67.0
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 9.4e-81 305.4 292 61.6
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 4.4e-78 296.6 285 61.8
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.6e-75 287.3 245 64.9
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.9e-74 283.9 281 58.7
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.4e-71 275.0 292 60.3
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.2e-69 267.7 293 55.6
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.6e-59 235.0 198 61.1
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.8e-58 230.3 291 52.2
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.7e-53 214.9 296 45.6
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 6.3e-53 213.0 298 44.0
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.8e-52 211.5 295 45.1
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.4e-52 211.1 293 44.4
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 3.2e-52 210.7 293 45.1
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.2e-51 208.8 293 44.0
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.5e-51 207.2 289 43.6
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.5e-51 207.2 289 43.6
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 7.8e-51 206.1 298 44.6
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 2.5e-49 201.1 293 43.7
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 9.5e-49 199.1 296 48.6
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 2.0e-46 191.4 287 41.5
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 2.0e-46 191.4 287 41.5
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.9e-45 187.6 319 39.5
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.1e-44 185.7 288 43.1
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 9.2e-44 182.6 203 56.2
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.7e-42 178.3 290 38.6
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 8.6e-42 176.0 289 40.5
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 6.8e-39 166.4 314 37.3
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.5e-38 165.2 211 46.9
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 3.4e-38 164.1 201 46.8
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.4e-38 164.1 270 38.9
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 4.4e-38 163.7 266 40.2
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.3e-37 162.2 223 43.0
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.9e-37 161.0 256 41.0
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 6.4e-37 159.8 210 41.9
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 8.3e-37 159.5 310 37.1
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 8.3e-37 159.5 237 42.6
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 8.3e-37 159.5 271 37.6
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.4e-36 158.7 217 41.9
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.9e-36 158.3 202 47.0
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 4.1e-36 157.1 290 39.3
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 5.4e-36 156.8 198 40.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 5.4e-36 156.8 200 44.0
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 4.6e-35 153.7 198 43.9
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 7.8e-35 152.9 239 40.2
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.8e-35 152.9 493 29.0
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.0e-34 152.5 201 44.3
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.3e-34 152.1 278 38.5
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 3.0e-34 151.0 278 36.7
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 5.1e-34 150.2 236 39.4
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 6.6e-34 149.8 248 38.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 6.6e-34 149.8 200 43.5
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 8.6e-34 149.4 276 36.2
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.5e-33 148.7 323 35.6
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.9e-33 148.3 308 36.0
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 2.5e-33 147.9 166 45.8
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 2.5e-33 147.9 235 39.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 3.3e-33 147.5 250 40.4
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 3.3e-33 147.5 294 37.1
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 3.3e-33 147.5 275 36.7
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 3.3e-33 147.5 315 35.2
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.3e-33 147.1 257 37.7
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 7.3e-33 146.4 200 42.5
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 7.3e-33 146.4 200 42.5
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 7.3e-33 146.4 171 49.1
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 9.5e-33 146.0 164 45.7
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-32 144.8 201 40.8
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 2.8e-32 144.4 170 45.3
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 3.6e-32 144.1 172 45.9
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 3.6e-32 144.1 176 44.9
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 3.6e-32 144.1 316 34.5
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 8.1e-32 142.9 172 45.9
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 1.4e-31 142.1 233 39.5
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.8e-31 141.7 173 46.2
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.8e-31 141.7 302 36.1
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.3e-31 141.4 307 35.8
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.3e-31 141.4 178 41.6
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 5.2e-31 140.2 167 48.5
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 8.9e-31 139.4 169 43.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 8.9e-31 139.4 172 41.9
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.2e-30 139.0 237 37.6
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.2e-30 139.0 249 34.9
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.5e-30 138.7 170 45.9
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.5e-30 138.7 177 41.8
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.0e-30 138.3 170 46.5
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 7.6e-30 136.3 226 42.5
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.3e-29 135.6 182 41.2
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 2.2e-29 134.8 159 43.4
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.2e-29 134.8 185 40.0
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 2.2e-29 134.8 200 39.0
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 8.3e-29 132.9 157 45.2
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.4e-28 132.1 176 41.5
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 4.1e-28 130.6 158 44.9
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 9.2e-28 129.4 178 41.0
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.6e-27 128.6 225 35.1
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.5e-27 127.5 170 44.7
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 6.0e-27 126.7 273 33.7
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 8.6e-26 122.9 173 39.9
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.3e-25 120.9 159 42.1
BolC6t39861H Brassica oleracea HOM05D004908 ORTHO05D006418 2.1e-24 118.2 114 64.9
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 2.8e-24 117.9 130 45.4
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 6.2e-24 116.7 117 48.7
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.1e-23 115.9 188 38.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 1.4e-23 115.5 188 38.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.4e-23 115.5 133 42.9
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.8e-23 115.2 186 38.2
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.0e-22 111.7 168 39.3
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 4.4e-22 110.5 171 39.8
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 5.8e-22 110.2 222 32.9
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.4e-20 104.8 199 34.7
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 7.1e-20 103.2 182 38.5
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-19 102.4 115 45.2
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.1e-19 101.7 248 34.7
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.7e-19 101.3 163 38.7
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 4.6e-19 100.5 155 40.6
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.0e-19 100.1 143 42.0
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.9e-18 97.4 95 48.4
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 8.7e-18 96.3 112 42.9
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.1e-17 95.9 229 33.6
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.9e-17 95.1 274 33.9
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 7.3e-17 93.2 116 45.7
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.8e-16 91.3 96 43.8
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 4.4e-14 84.0 181 33.1
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.6e-14 83.2 140 37.9
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.4e-12 79.0 89 43.8
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.9e-12 78.6 170 34.1
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-12 77.4 99 40.4
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 4.2e-12 77.4 72 45.8
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.4e-12 77.0 170 33.5
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.3e-12 76.3 150 39.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 9.3e-12 76.3 131 38.2
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 6.0e-11 73.6 127 36.2
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.7e-10 72.0 74 45.9
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 3.3e-09 67.8 232 29.3
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-08 65.1 90 45.6


User provided reference genes

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