Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 2.9e-76 288.5 146 100.0
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 3.0e-73 278.5 146 96.6
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 3.0e-73 278.5 146 96.6
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 1.9e-72 275.8 146 95.2
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 1.9e-72 275.8 146 95.2
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 6.9e-70 267.3 146 93.2
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 3.9e-57 224.9 146 79.5
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 6.7e-57 224.2 146 80.1
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 5.3e-54 214.5 147 79.6
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 2.0e-53 212.6 146 77.4
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 5.8e-53 211.1 138 79.7
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 7.6e-53 210.7 142 78.2
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 3.7e-39 165.2 142 63.4
BraA07t30596Z Brassica rapa HOM05D007960 ORTHO05D010026 8.2e-39 164.1 148 66.2
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 2.2e-28 129.4 135 62.2
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 1.9e-19 99.8 134 46.3
BcaC08g45611 Brassica carinata HOM05D007960 ORTHO05D010026 2.1e-18 96.3 76 65.8
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 2.3e-17 92.8 113 46.0
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 3.0e-17 92.4 116 47.4
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 3.9e-17 92.0 113 45.1
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 6.7e-17 91.3 92 51.1
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 7.4e-16 87.8 94 53.2
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 7.4e-16 87.8 94 53.2
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 7.4e-16 87.8 83 56.6
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 2.2e-15 86.3 94 52.1
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 6.3e-15 84.7 139 43.2
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 1.1e-14 84.0 102 48.0
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 1.8e-14 83.2 137 45.3
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 5.3e-14 81.6 133 42.1
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 5.3e-14 81.6 152 42.8
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 2.0e-13 79.7 136 40.4
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 3.5e-13 79.0 138 39.1
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 5.9e-13 78.2 148 39.2
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.0e-12 77.4 79 54.4
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.0e-12 77.4 79 54.4
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 1.0e-12 77.4 141 46.1
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 1.3e-12 77.0 84 52.4
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 2.2e-12 76.3 96 53.1
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 3.8e-12 75.5 122 42.6
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 6.5e-12 74.7 114 45.6
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 5.5e-11 71.6 84 48.8
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 5.5e-11 71.6 82 52.4
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 7.2e-11 71.2 115 43.5
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 9.4e-11 70.9 73 52.1
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 4.7e-10 68.6 115 42.6
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 1.8e-09 66.6 113 41.6
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 8.8e-09 64.3 81 50.6
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 1.2e-08 63.9 103 41.7
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 2.6e-08 62.8 136 39.0
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 2.6e-08 62.8 106 46.2
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 3.3e-08 62.4 111 41.4
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 3.3e-08 62.4 90 45.6
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 4.4e-08 62.0 128 38.3
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 5.7e-08 61.6 90 46.7
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 7.5e-08 61.2 83 38.6
Glyma.05G015600 Glycine max HOM05D007960 ORTHO05D010026 7.5e-08 61.2 83 44.6
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 9.7e-08 60.8 106 41.5
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 1.3e-07 60.5 62 53.2
Rhsim08G0149000 Rhododendron simsii HOM05D007960 ORTHO05D010026 1.7e-07 60.1 125 39.2
ClCG04G011400 Citrullus lanatus HOM05D007960 ORTHO05D010026 2.2e-07 59.7 75 45.3
Duzib205G0322 Durio zibethinus HOM05D007960 ORTHO05D010026 2.2e-07 59.7 56 51.8
PSO063G1775 Papaver somniferum HOM05D007960 ORTHO05D010026 2.2e-07 59.7 141 32.6
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 3.7e-07 58.9 136 39.0
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 3.7e-07 58.9 94 41.5
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 4.8e-07 58.5 92 44.6
Actinidia16062 Actinidia chinensis HOM05D000227 ORTHO05D001491 8.2e-07 57.8 70 47.1
Sed0018526 Sechium edule HOM05D007960 ORTHO05D010026 8.2e-07 57.8 71 49.3
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 8.2e-07 57.8 136 39.0
Lalb_Chr12g0197501 Lupinus albus HOM05D007960 ORTHO05D010026 1.1e-06 57.4 65 52.3
PSO782G5681 Papaver somniferum HOM05D007960 ORTHO05D010026 2.4e-06 56.2 140 31.4
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 2.4e-06 56.2 107 30.8
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 4.1e-06 55.5 107 34.6
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 4.1e-06 55.5 113 38.9
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 4.1e-06 55.5 114 35.1
Aqoxy3G03839 Aquilegia oxysepala HOM05D007960 ORTHO05D010026 5.3e-06 55.1 94 41.5
TWI15G0545 Tripterygium wilfordii HOM05D056897 ORTHO05D010026 7.0e-06 54.7 79 38.0
PGR044G2003 Punica granatum HOM05D007960 ORTHO05D010026 9.1e-06 54.3 94 34.0


User provided reference genes

Program Settings