Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 5.5e-53 210.7 105 100.0
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 4.8e-49 197.6 105 93.3
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 2.0e-47 192.2 106 92.5
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 2.0e-47 192.2 106 92.5
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 4.2e-45 184.5 105 88.6
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.2e-31 139.8 105 70.5
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.5e-29 132.9 109 66.1
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 9.4e-29 130.2 109 65.1
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.3e-27 125.6 108 65.7
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 6.7e-27 124.0 110 61.8
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 8.8e-27 123.6 109 63.3
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.3e-17 93.2 59 74.6
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.7e-14 82.8 101 48.5
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 3.2e-13 78.6 106 47.2
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.2e-12 76.6 107 45.8
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 4.7e-12 74.7 119 41.2
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.0e-11 73.6 115 44.3
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.0e-11 73.6 120 40.0
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.0e-11 73.6 114 40.4
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.4e-11 73.2 104 44.2
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.4e-11 73.2 111 43.2
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.4e-11 73.2 111 43.2
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.8e-11 72.8 108 42.6
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 1.8e-11 72.8 104 43.3
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 2.3e-11 72.4 102 43.1
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.3e-11 72.4 108 43.5
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 2.3e-11 72.4 117 42.7
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 3.0e-11 72.0 110 42.7
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.0e-11 72.0 113 43.4
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.0e-11 71.6 110 44.5
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.8e-11 70.9 114 44.7
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 6.8e-11 70.9 106 42.5
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 6.8e-11 70.9 96 43.8
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 6.8e-11 70.9 58 58.6
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 8.8e-11 70.5 61 57.4
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 8.8e-11 70.5 122 38.5
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 8.8e-11 70.5 108 40.7
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 8.8e-11 70.5 114 44.7
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.2e-10 70.1 109 40.4
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.2e-10 70.1 108 41.7
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.5e-10 69.7 115 43.5
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.5e-10 69.7 101 41.6
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.0e-10 69.3 110 41.8
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 2.6e-10 68.9 114 43.0
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.6e-10 68.9 92 46.7
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 2.6e-10 68.9 109 43.1
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 2.6e-10 68.9 98 44.9
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 2.6e-10 68.9 55 60.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.4e-10 68.6 86 46.5
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.4e-10 68.6 109 40.4
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 3.4e-10 68.6 96 43.8
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 4.4e-10 68.2 77 48.1
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 5.7e-10 67.8 115 40.9
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 5.7e-10 67.8 108 38.0
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 7.5e-10 67.4 108 44.4
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 9.8e-10 67.0 123 39.0
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 9.8e-10 67.0 55 58.2
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.3e-09 66.6 127 38.6
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.3e-09 66.6 61 54.1
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.7e-09 66.2 120 39.2
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.2e-09 65.9 102 44.1
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 2.2e-09 65.9 111 36.9
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 2.8e-09 65.5 55 60.0
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.8e-09 65.5 109 41.3
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.7e-09 65.1 62 54.8
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 3.7e-09 65.1 105 39.0
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 4.9e-09 64.7 56 60.7
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 4.9e-09 64.7 118 40.7
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.9e-09 64.7 58 56.9
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 6.3e-09 64.3 60 51.7
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 6.3e-09 64.3 60 51.7
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 6.3e-09 64.3 108 38.0
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 6.3e-09 64.3 116 37.9
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 8.3e-09 63.9 60 50.0
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 8.3e-09 63.9 60 50.0
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 8.3e-09 63.9 114 36.8
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 8.3e-09 63.9 109 39.4
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.1e-08 63.5 66 51.5
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-08 63.5 66 50.0
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.1e-08 63.5 112 37.5
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.4e-08 63.2 98 44.9
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.8e-08 62.8 120 35.8
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.8e-08 62.8 50 60.0
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.8e-08 62.8 111 36.0
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.8e-08 62.8 107 42.1
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 1.8e-08 62.8 109 41.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 1.8e-08 62.8 67 50.7
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.8e-08 62.8 71 45.1
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.4e-08 62.4 104 40.4
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.4e-08 62.4 62 48.4
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 2.4e-08 62.4 108 37.0
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 2.4e-08 62.4 79 44.3
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.1e-08 62.0 59 52.5
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.1e-08 61.6 106 41.5
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.1e-08 61.6 66 48.5
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 4.1e-08 61.6 52 57.7
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 5.4e-08 61.2 61 49.2
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 7.0e-08 60.8 111 38.7
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 7.0e-08 60.8 54 53.7
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 7.0e-08 60.8 110 40.0
AL1G55880 Arabidopsis lyrata HOM05D012335 ORTHO05D014421 9.2e-08 60.5 90 45.6
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 9.2e-08 60.5 49 57.1
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 1.2e-07 60.1 49 59.2
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 1.2e-07 60.1 49 59.2
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 1.2e-07 60.1 66 48.5
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 2.0e-07 59.3 102 35.3
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 2.0e-07 59.3 102 37.3
CARHR039040 Cardamine hirsuta HOM05D012335 ORTHO05D014421 3.5e-07 58.5 61 49.2
Thhalv10012120m.g Eutrema salsugineum HOM05D012335 ORTHO05D014421 3.5e-07 58.5 95 42.1
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.5e-07 58.2 114 40.4
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 4.5e-07 58.2 106 38.7
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.5e-07 58.2 104 38.5
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 4.5e-07 58.2 115 33.9
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 5.9e-07 57.8 92 44.6
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 5.9e-07 57.8 111 36.0
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 1.3e-06 56.6 105 37.1
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 1.3e-06 56.6 49 55.1
BraA08t32447Z Brassica rapa HOM05D012335 ORTHO05D014421 1.7e-06 56.2 95 43.2
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.7e-06 56.2 64 46.9
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 1.7e-06 56.2 62 48.4
A08p04230 Brassica napus HOM05D012335 ORTHO05D014421 2.3e-06 55.8 95 43.2
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.9e-06 55.5 54 51.9
C08p04500 Brassica napus HOM05D012335 ORTHO05D014421 3.8e-06 55.1 95 43.2
BolC8t47255H Brassica oleracea HOM05D012335 ORTHO05D014421 3.8e-06 55.1 95 43.2
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.8e-06 55.1 102 37.3
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.8e-06 55.1 48 56.2
BcaB04g17372 Brassica carinata HOM05D012335 ORTHO05D014421 5.0e-06 54.7 95 42.1
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 5.0e-06 54.7 40 65.0
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 5.0e-06 54.7 69 44.9
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 5.0e-06 54.7 112 35.7
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 6.6e-06 54.3 120 33.3
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 8.6e-06 53.9 109 34.9


User provided reference genes

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