Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 1.8e-54 215.7 111 100.0
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 1.8e-54 215.7 111 100.0
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 5.8e-37 157.5 178 55.6
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 1.7e-36 156.0 181 55.2
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 7.6e-29 130.6 182 50.5
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 9.9e-29 130.2 180 48.9
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 6.4e-28 127.5 190 45.8
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.9e-27 125.9 162 51.9
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 3.0e-25 118.6 173 46.8
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 3.0e-25 118.6 180 46.1
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 7.6e-21 104.0 58 93.1
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.8e-20 101.7 175 44.6
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 6.5e-20 100.9 182 40.1
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 1.9e-19 99.4 186 40.9
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 3.2e-19 98.6 179 40.2
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 4.2e-19 98.2 151 45.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 9.3e-19 97.1 157 44.6
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 2.7e-18 95.5 196 39.3
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 1.0e-17 93.6 159 44.7
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 8.7e-17 90.5 162 42.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.5e-16 89.7 159 42.1
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.5e-16 89.7 165 41.2
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 2.5e-16 89.0 76 65.8
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.5e-16 89.0 76 65.8
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 2.5e-16 89.0 83 61.4
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 2.5e-16 89.0 76 67.1
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.5e-16 89.0 46 93.5
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 3.3e-16 88.6 161 41.6
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 3.3e-16 88.6 48 91.7
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 4.3e-16 88.2 170 41.2
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 5.7e-16 87.8 76 65.8
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 5.7e-16 87.8 76 65.8
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 5.7e-16 87.8 48 89.6
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 5.7e-16 87.8 153 43.8
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 5.7e-16 87.8 76 64.5
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 5.7e-16 87.8 162 42.0
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 7.4e-16 87.4 168 40.5
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 7.4e-16 87.4 76 65.8
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 7.4e-16 87.4 72 66.7
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 7.4e-16 87.4 48 89.6
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 7.4e-16 87.4 48 89.6
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 7.4e-16 87.4 48 89.6
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 7.4e-16 87.4 46 91.3
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 9.7e-16 87.0 81 61.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 9.7e-16 87.0 48 89.6
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 9.7e-16 87.0 118 50.8
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-15 86.7 48 89.6
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.3e-15 86.7 48 89.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.3e-15 86.7 81 60.5
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 1.6e-15 86.3 48 89.6
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.6e-15 86.3 48 87.5
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.2e-15 85.9 76 64.5
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.2e-15 85.9 156 41.7
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 2.2e-15 85.9 83 63.9
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 2.2e-15 85.9 180 39.4
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 2.2e-15 85.9 166 41.6
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.2e-15 85.9 48 87.5
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 2.8e-15 85.5 76 63.2
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.8e-15 85.5 170 39.4
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.8e-15 84.7 83 60.2
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 4.8e-15 84.7 83 60.2
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 4.8e-15 84.7 145 44.8
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.8e-15 84.7 105 51.4
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.8e-15 84.7 156 43.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.8e-15 84.7 78 64.1
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 8.2e-15 84.0 167 39.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 8.2e-15 84.0 165 40.0
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 8.2e-15 84.0 123 46.3
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.1e-14 81.6 163 39.3
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 5.3e-14 81.3 166 39.2
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 5.3e-14 81.3 171 40.4
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.2e-13 80.1 75 62.7
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 3.4e-13 78.6 139 43.9
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 3.4e-13 78.6 44 86.4
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 5.0e-12 74.7 141 38.3
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 5.0e-12 74.7 48 75.0
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.9e-11 72.8 133 45.9
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 5.5e-11 71.2 114 44.7
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.7e-07 59.7 117 43.6
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 4.1e-06 55.1 32 87.5
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 4.1e-06 55.1 32 87.5
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.1e-06 55.1 32 87.5
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 6.9e-06 54.3 32 84.4
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 9.1e-06 53.9 32 84.4


User provided reference genes

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