Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p47410 Brassica napus HOM05D014449 ORTHO05D015517 1.8e-56 222.2 106 100.0
BolC7t43594H Brassica oleracea HOM05D014449 ORTHO05D015517 4.5e-55 217.6 106 97.2
C05p31820 Brassica napus HOM05D014449 ORTHO05D015517 5.0e-54 214.2 106 96.2
BolC1t00382H Brassica oleracea HOM05D014449 ORTHO05D015517 6.5e-54 213.8 106 95.3
BcaC01g06200 Brassica carinata HOM05D014449 ORTHO05D015517 1.2e-52 209.5 106 95.3
BcaC03g16995 Brassica carinata HOM05D014449 ORTHO05D015517 3.1e-40 168.3 86 89.5
BcaC01g04324 Brassica carinata HOM05D014449 ORTHO05D015517 5.6e-37 157.5 106 77.4
BolC4t22435H Brassica oleracea HOM05D014449 ORTHO05D015517 7.3e-37 157.1 96 81.2
BcaB07g31859 Brassica carinata HOM05D000819 ORTHO05D000661 2.6e-18 95.5 55 80.0
BcaC05g25746 Brassica carinata HOM05D000819 ORTHO05D000661 5.8e-18 94.4 55 83.6
A06p14530 Brassica napus HOM05D000819 ORTHO05D000661 5.8e-18 94.4 55 83.6
C05p16760 Brassica napus HOM05D000819 ORTHO05D000661 5.8e-18 94.4 55 83.6
BolC5t30377H Brassica oleracea HOM05D000819 ORTHO05D000661 5.8e-18 94.4 55 83.6
BraA06t24579Z Brassica rapa HOM05D000819 ORTHO05D000661 5.8e-18 94.4 55 83.6
Thhalv10008420m.g Eutrema salsugineum HOM05D000819 ORTHO05D000661 8.3e-17 90.5 55 78.2
Carub.0001s1812 Capsella rubella HOM05D000819 ORTHO05D000661 1.4e-16 89.7 55 78.2
Sp1g16440 Schrenkiella parvula HOM05D000819 ORTHO05D000661 1.6e-15 86.3 55 78.2
AL1G30930 Arabidopsis lyrata HOM05D000819 ORTHO05D000661 2.1e-15 85.9 55 74.5
AT1G18490 Arabidopsis thaliana HOM05D000819 ORTHO05D000661 2.1e-15 85.9 55 74.5
CARHR019110 Cardamine hirsuta HOM05D000819 ORTHO05D000661 1.0e-14 83.6 55 72.7
BcaC02g12062 Brassica carinata HOM05D014449 ORTHO05D015517 1.7e-14 82.8 80 62.5
Dinv38614 Davidia involucrata HOM05D000819 ORTHO05D000661 5.1e-14 81.3 68 52.9
THA.LOC104812123 Tarenaya hassleriana HOM05D000819 ORTHO05D000661 7.3e-13 77.4 55 61.8
Aa31LG7G3180 Aethionema arabicum HOM05D000819 ORTHO05D000661 1.2e-12 76.6 55 69.1
vmacro17650 Vaccinium macrocarpon HOM05D000819 ORTHO05D000661 1.2e-12 76.6 64 51.6
VMungo1309G0507 Vigna mungo HOM05D000819 ORTHO05D000661 1.2e-12 76.6 55 60.0
CiPaw.16G081800 Carya illinoinensis HOM05D000819 ORTHO05D000661 1.6e-12 76.3 55 58.2
Dinv36854 Davidia involucrata HOM05D000819 ORTHO05D000661 1.6e-12 76.3 55 60.0
VMungo1309G0805 Vigna mungo HOM05D000819 ORTHO05D000661 1.6e-12 76.3 62 58.1
Atru.chr9.667 Acer truncatum HOM05D000819 ORTHO05D000661 2.1e-12 75.9 55 60.0
Glyma.06G208100 Glycine max HOM05D000819 ORTHO05D000661 2.8e-12 75.5 55 58.2
QL10p022014 Quercus lobata HOM05D000819 ORTHO05D000661 2.8e-12 75.5 55 54.5
Hund02538 Selenicereus undatus HOM05D000819 ORTHO05D000661 2.8e-12 75.5 55 58.2
Glyma.04G156900 Glycine max HOM05D000819 ORTHO05D000661 3.6e-12 75.1 55 56.4
Glyma.15G207700 Glycine max HOM05D000819 ORTHO05D000661 3.6e-12 75.1 55 56.4
Lj1g0024516 Lotus japonicus HOM05D000819 ORTHO05D000661 3.6e-12 75.1 53 62.3
Phvul.009G191000 Phaseolus vulgaris HOM05D000819 ORTHO05D000661 3.6e-12 75.1 55 58.2
Cfa019862 Carpinus fangiana HOM05D000819 ORTHO05D000661 4.7e-12 74.7 55 58.2
Haze_18556 Corylus avellana HOM05D000819 ORTHO05D000661 4.7e-12 74.7 55 58.2
Lalb_Chr08g0235221 Lupinus albus HOM05D000819 ORTHO05D000661 8.1e-12 73.9 53 60.4
Prupe.5G212700 Prunus persica HOM05D000819 ORTHO05D000661 8.1e-12 73.9 55 58.2
Aqoxy3G03814 Aquilegia oxysepala HOM05D000819 ORTHO05D000661 1.4e-11 73.2 53 60.4
AUR62008427 Chenopodium quinoa HOM05D000819 ORTHO05D000661 1.4e-11 73.2 67 52.2
Rhsim11G0054200 Rhododendron simsii HOM05D000819 ORTHO05D000661 1.4e-11 73.2 55 54.5
TAR629G0207 Trochodendron aralioides HOM05D000819 ORTHO05D000661 1.4e-11 73.2 55 58.2
CSS0019389 Camellia sinensis var. sinensis HOM05D000819 ORTHO05D000661 1.8e-11 72.8 55 56.4
CSS0045226 Camellia sinensis var. sinensis HOM05D000819 ORTHO05D000661 1.8e-11 72.8 55 56.4
CANSAT80G0579 Cannabis sativa HOM05D000819 ORTHO05D000661 1.8e-11 72.8 55 54.5
PSO063G5316 Papaver somniferum HOM05D000819 ORTHO05D000661 1.8e-11 72.8 55 58.2
C04p08340 Brassica napus HOM05D014449 ORTHO05D015517 2.3e-11 72.4 36 88.9
Gohir.A11G034700 Gossypium hirsutum HOM05D000819 ORTHO05D000661 2.3e-11 72.4 55 61.8
arahy.Tifrunner.gnm1.ann1.Y9A69F Arachis hypogaea HOM05D000819 ORTHO05D000661 3.1e-11 72.0 55 54.5
Duzib205G1963 Durio zibethinus HOM05D000819 ORTHO05D000661 3.1e-11 72.0 55 60.0
Gorai.007G040900 Gossypium raimondii HOM05D000819 ORTHO05D000661 3.1e-11 72.0 55 60.0
arahy.Tifrunner.gnm1.ann1.VNY0QE Arachis hypogaea HOM05D000819 ORTHO05D000661 4.0e-11 71.6 55 54.5
CsaV3_1G003120 Cucumis sativus L. HOM05D000819 ORTHO05D000661 4.0e-11 71.6 55 56.4
Gohir.D11G038200 Gossypium hirsutum HOM05D000819 ORTHO05D000661 4.0e-11 71.6 55 60.0
PGR083G0703 Punica granatum HOM05D000819 ORTHO05D000661 4.0e-11 71.6 55 54.5
Ca_02685_v3 Cicer arietinum L. HOM05D000819 ORTHO05D000661 5.2e-11 71.2 55 56.4
MELO3C017267.2 Cucumis melo HOM05D000819 ORTHO05D000661 5.2e-11 71.2 55 56.4
Manes.05G116200 Manihot esculenta HOM05D000819 ORTHO05D000661 5.2e-11 71.2 55 54.5
Medtr2g055320 Medicago truncatula HOM05D000819 ORTHO05D000661 5.2e-11 71.2 53 60.4
Medtr2g058330 Medicago truncatula HOM05D000819 ORTHO05D000661 5.2e-11 71.2 53 60.4
Psat1g028080 Pisum sativum HOM05D000819 ORTHO05D000661 5.2e-11 71.2 55 56.4
Thecc.03G113400 Theobroma cacao HOM05D000819 ORTHO05D000661 6.8e-11 70.9 55 60.0
Ciclev10021506m.g Citrus clementina HOM05D000819 ORTHO05D000661 8.9e-11 70.5 55 56.4
Eucgr.B00664 Eucalyptus grandis HOM05D000819 ORTHO05D000661 8.9e-11 70.5 55 52.7
Ah.02g113610 Amaranthus hybridus HOM05D000715 ORTHO05D000024 1.2e-10 70.1 57 52.6
EL10Ac5g11031 Beta vulgaris HOM05D000819 ORTHO05D000661 1.2e-10 70.1 71 47.9
ClCG06G015220 Citrullus lanatus HOM05D000819 ORTHO05D000661 1.2e-10 70.1 55 56.4
Cpa.g.sc13.90 Carica papaya HOM05D000819 ORTHO05D000661 1.5e-10 69.7 67 50.7
Lj9C434T19 Lonicera japonica HOM05D000819 ORTHO05D000661 1.5e-10 69.7 55 56.4
Duzib068G0976 Durio zibethinus HOM05D000819 ORTHO05D000661 2.0e-10 69.3 55 56.4
GSVIVG01008196001 Vitis vinifera HOM05D000819 ORTHO05D000661 2.0e-10 69.3 55 50.9
Cc04_g07850 Coffea canephora HOM05D000819 ORTHO05D000661 2.6e-10 68.9 55 56.4
PSO782G0001 Papaver somniferum HOM05D000819 ORTHO05D000661 2.6e-10 68.9 55 56.4
MD14G1218600 Malus domestica HOM05D000819 ORTHO05D000661 3.4e-10 68.6 55 56.4
Sed0016272 Sechium edule HOM05D000819 ORTHO05D000661 3.4e-10 68.6 55 54.5
AUR62021668 Chenopodium quinoa HOM05D000819 ORTHO05D000661 7.6e-10 67.4 55 56.4
Potri.012G057400 Populus trichocarpa HOM05D000819 ORTHO05D000661 7.6e-10 67.4 55 54.5
Sabra15G0080800 Salix brachista HOM05D000819 ORTHO05D000661 7.6e-10 67.4 55 49.1
Migut.D01485 Erythranthe guttata HOM05D000819 ORTHO05D000661 9.9e-10 67.0 55 52.7
Nitab4.5_0000646g0140 Nicotiana tabacum HOM05D000819 ORTHO05D000661 9.9e-10 67.0 65 49.2
DCAR_023149 Daucus carota HOM05D000819 ORTHO05D000661 1.3e-09 66.6 55 47.3
Solyc03g114510.4 Solanum lycopersicum HOM05D000819 ORTHO05D000661 1.3e-09 66.6 53 54.7
Sopen03g033600 Solanum pennellii HOM05D000819 ORTHO05D000661 1.3e-09 66.6 53 54.7
TPR.G39596 Trifolium pratense HOM05D000819 ORTHO05D000661 1.3e-09 66.6 55 54.5
CAN.G982.13 Capsicum annuum HOM05D000819 ORTHO05D000661 1.7e-09 66.2 53 56.6
FAN18G2242 Fragaria x ananassa HOM05D000819 ORTHO05D000661 1.7e-09 66.2 64 46.9
SHI18987 Sapria himalayana HOM05D000819 ORTHO05D015517 1.7e-09 66.2 56 50.0
MSTRG.4501 Avicennia marina HOM05D000819 ORTHO05D000661 2.2e-09 65.9 55 52.7
CDE04G1895 Ceratophyllum demersum HOM05D000819 ORTHO05D000661 2.2e-09 65.9 60 53.3
Peaxi162Scf00017g03133 Petunia axillaris HOM05D000819 ORTHO05D000661 2.2e-09 65.9 53 54.7
Potri.015G055600 Populus trichocarpa HOM05D000819 ORTHO05D000661 2.2e-09 65.9 55 47.3
Sc04g0004060 Simmondsia chinensis HOM05D000819 ORTHO05D000661 2.2e-09 65.9 55 52.7
PGSC0003DMG400024609 Solanum tuberosum HOM05D000819 ORTHO05D000661 4.9e-09 64.7 53 54.7
TWI81G1087 Tripterygium wilfordii HOM05D000819 ORTHO05D000661 4.9e-09 64.7 55 50.9
MBI14_g23870_MAGBIO Magnolia biondii HOM05D000819 ORTHO05D000661 8.4e-09 63.9 60 50.0
FvH4_5g13010 Fragaria vesca HOM05D000819 ORTHO05D000661 1.1e-08 63.5 67 43.3
Nitab4.5_0004342g0100 Nicotiana tabacum HOM05D000819 ORTHO05D000661 1.1e-08 63.5 52 53.8
Actinidia16064 Actinidia chinensis HOM05D000819 ORTHO05D000661 1.4e-08 63.2 55 50.9
FAN13G0624 Fragaria x ananassa HOM05D000819 ORTHO05D000661 1.9e-08 62.8 55 50.9
Manes.01G023300 Manihot esculenta HOM05D000819 ORTHO05D000661 1.9e-08 62.8 55 47.3
ATR0691G258 Amborella trichopoda HOM05D000819 ORTHO05D000661 2.4e-08 62.4 66 43.9
Nn3g17621 Nelumbo nucifera HOM05D000819 ORTHO05D000661 2.4e-08 62.4 55 47.3
MBI14_g38784_MAGBIO Magnolia biondii HOM05D000819 ORTHO05D000661 4.1e-08 61.6 60 48.3
MD06G1208200 Malus domestica HOM05D000819 ORTHO05D000661 5.4e-08 61.2 55 52.7
Oeu031814.1 Olea europaea HOM05D000819 ORTHO05D000661 1.6e-07 59.7 53 45.3
ECA246G5019 Erigeron canadensis HOM05D000819 ORTHO05D000661 3.5e-07 58.5 65 46.2
Lsat_1_v5_gn_5_24060 Lactuca sativa HOM05D000819 ORTHO05D000661 6.0e-07 57.8 53 47.2
unitig_578.g15940 Utricularia gibba HOM05D000819 ORTHO05D015517 6.0e-07 57.8 51 47.1
HPP92_021644 Vanilla planifolia HOM05D000819 ORTHO05D000661 7.8e-07 57.4 58 50.0
HanXRQChr05g0157791 Helianthus annuus HOM05D000819 ORTHO05D000661 1.3e-06 56.6 53 49.1
SEGI_36656 Sequoiadendron giganteum HOM05D000819 ORTHO05D000661 1.3e-06 56.6 63 44.4
RcHm_v2.0_Chr7g0184171 Rosa chinensis HOM05D000819 ORTHO05D000661 3.0e-06 55.5 55 49.1
Os08g0133000 Oryza sativa ssp. japonica HOM05D000819 ORTHO05D000661 5.1e-06 54.7 58 44.8
Os08g0133700 Oryza sativa ssp. japonica HOM05D000819 ORTHO05D000661 5.1e-06 54.7 58 44.8
QL10p022034 Quercus lobata HOM05D000819 ORTHO05D000661 6.6e-06 54.3 55 43.6


User provided reference genes

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