Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1299.6 661 100.0
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1299.6 661 100.0
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1290.8 658 99.4
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1288.9 672 98.1
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 0.0e+00 1219.9 660 92.9
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 0.0e+00 1200.7 660 90.6
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 0.0e+00 1199.1 660 91.7
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 0.0e+00 1184.9 660 90.6
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 0.0e+00 1184.1 660 90.6
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 0.0e+00 1174.8 660 89.5
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1139.4 658 86.9
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 0.0e+00 1129.0 659 86.2
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1127.9 650 87.7
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 0.0e+00 1123.6 660 85.6
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1121.7 659 85.6
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1118.6 662 85.8
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 9.0e-312 1072.8 662 81.0
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 3.0e-266 921.8 643 70.8
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 5.7e-265 917.5 644 71.1
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 5.7e-265 917.5 648 69.6
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.1e-263 913.3 643 69.8
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.1e-263 913.3 643 69.8
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.7e-262 908.7 658 69.0
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.5e-262 908.3 642 69.8
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.5e-262 908.3 644 70.8
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 1.7e-261 906.0 649 69.0
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 8.8e-258 893.6 646 67.2
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 3.4e-257 891.7 648 68.4
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.3e-256 889.8 641 68.6
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 1.3e-256 889.8 656 66.9
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 6.3e-256 887.5 642 68.4
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.1e-255 886.7 650 67.8
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 1.1e-255 886.7 642 68.4
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 3.1e-255 885.2 644 67.4
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.5e-254 881.7 663 66.1
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 5.9e-254 880.9 660 67.3
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 8.6e-253 877.1 642 68.4
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.5e-252 875.5 642 67.4
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 2.5e-252 875.5 655 66.3
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 4.2e-252 874.8 654 67.3
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 5.5e-252 874.4 654 67.3
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 9.5e-252 873.6 649 66.9
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.0e-250 870.2 658 66.6
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 5.7e-249 864.4 642 66.4
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 1.7e-248 862.8 658 65.8
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 8.3e-248 860.5 642 67.3
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 4.1e-247 858.2 647 67.1
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 5.4e-247 857.8 644 66.6
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 7.0e-247 857.4 645 66.5
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.2e-246 856.7 643 66.6
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 2.7e-246 855.5 641 66.1
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 5.9e-246 854.4 644 66.0
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 7.8e-246 854.0 641 65.4
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.0e-245 853.6 658 66.6
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 1.0e-245 853.6 647 67.4
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.3e-245 852.4 641 66.0
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.9e-245 852.0 642 66.0
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 3.3e-244 848.6 648 66.2
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.5e-244 847.0 641 65.8
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.0e-242 843.6 619 67.9
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 1.4e-242 843.2 643 67.2
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 3.1e-242 842.0 645 65.3
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 4.0e-242 841.6 643 64.7
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.2e-241 840.1 576 71.0
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 1.7e-240 836.3 639 65.4
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 6.4e-240 834.3 644 65.8
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.2e-239 832.0 647 64.9
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 3.9e-237 825.1 641 64.4
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 4.3e-236 821.6 652 64.1
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.1e-234 817.0 653 62.5
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.8e-234 816.2 648 62.8
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 2.3e-234 815.8 660 62.9
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 5.2e-234 814.7 658 62.0
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 1.9e-231 806.2 655 61.7
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.4e-231 805.8 642 64.2
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 3.2e-231 805.4 645 64.3
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 9.2e-231 803.9 642 62.6
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 9.2e-231 803.9 642 62.3
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.8e-226 789.6 616 63.6
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 8.4e-224 780.8 657 62.1
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.1e-222 776.2 653 60.9
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 4.0e-218 761.9 647 62.0
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 2.6e-217 759.2 648 61.0
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 2.9e-216 755.7 644 59.8
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 2.7e-214 749.2 651 59.4
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.1e-212 743.8 651 60.4
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 3.3e-212 742.3 679 58.9
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 8.7e-205 717.6 645 59.7
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 1.3e-200 703.7 556 62.9
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.8e-197 693.3 525 65.5
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 6.9e-194 681.4 661 55.5
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.3e-188 662.1 617 57.5
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 3.7e-187 659.1 676 54.0
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 2.6e-185 652.9 555 60.4
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 3.7e-179 632.5 646 55.7
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.5e-177 627.1 624 53.8
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 7.2e-159 565.1 442 62.4
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 2.0e-156 557.0 671 46.8
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 3.7e-155 552.7 645 46.5
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.1e-151 541.2 575 52.3
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 9.4e-151 538.1 497 55.9
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 8.8e-149 531.6 665 44.7
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 6.3e-147 525.4 645 44.5
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 5.4e-146 522.3 649 47.3
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 1.2e-116 424.9 629 39.4
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 4.9e-83 313.2 336 52.1
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.5e-76 290.0 221 61.1
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 3.2e-50 204.1 280 46.4
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.5e-47 195.3 157 59.2
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 1.8e-45 188.3 278 39.9
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 5.9e-44 183.3 122 73.8
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.5e-39 168.7 156 52.6
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 9.7e-39 166.0 107 76.6
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 1.3e-38 165.6 141 57.4
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.7e-38 164.1 141 61.0
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 8.2e-38 162.9 107 75.7
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 9.1e-37 159.5 156 53.8
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 1.3e-35 155.6 110 73.6
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 2.2e-35 154.8 229 39.3
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.2e-33 149.1 131 58.0
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 2.3e-32 144.8 160 48.1
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 1.2e-31 142.5 133 60.9
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.1e-29 136.0 86 76.7
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.9e-28 130.2 87 71.3
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.6e-25 122.1 81 77.8
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 4.0e-24 117.5 80 76.2
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.8e-24 116.7 79 72.2
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 3.1e-21 107.8 101 52.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 8.6e-19 99.8 88 60.2
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 9.8e-15 86.3 103 51.5
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 3.2e-13 81.3 515 21.9
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 9.2e-13 79.7 48 77.1
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.6e-12 79.0 89 48.3
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 2.7e-12 78.2 54 72.2
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 5.8e-07 60.5 227 25.1


User provided reference genes

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