Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 9.6e-124 446.8 223 100.0
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 9.6e-124 446.8 223 100.0
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 3.1e-122 441.8 223 98.7
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 1.0e-112 410.2 217 93.1
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-109 399.8 224 89.3
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 1.4e-109 399.8 224 89.3
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 6.3e-107 391.0 217 89.4
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 2.1e-102 375.9 217 83.9
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-101 373.2 217 82.9
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 5.0e-96 354.8 221 81.0
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 5.0e-96 354.8 221 81.0
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 5.3e-90 334.7 195 84.1
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 8.8e-85 317.4 222 76.1
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 8.8e-85 317.4 229 72.5
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 2.1e-78 296.2 231 67.5
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 6.3e-75 284.6 230 67.0
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 2.7e-73 279.3 209 70.3
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 1.9e-71 273.1 226 65.5
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 3.6e-70 268.9 227 67.0
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 3.6e-70 268.9 227 67.0
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 1.0e-69 267.3 228 66.7
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 4.0e-69 265.4 228 63.2
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-65 253.1 213 65.7
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 2.3e-64 249.6 217 62.7
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-63 247.3 221 56.1
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 1.5e-63 246.9 228 61.8
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 3.6e-62 242.3 218 56.9
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 4.7e-62 241.9 220 57.7
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 4.7e-62 241.9 220 57.7
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 4.4e-60 235.3 220 56.4
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 4.4e-60 235.3 220 56.4
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 3.7e-59 232.3 231 58.4
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 8.3e-59 231.1 217 60.8
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 2.0e-57 226.5 215 55.3
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-56 224.2 215 54.0
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 1.0e-56 224.2 215 54.0
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 5.0e-56 221.9 215 54.9
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 5.0e-56 221.9 215 54.9
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 6.6e-56 221.5 221 56.6
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 1.5e-55 220.3 221 57.0
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 3.6e-54 215.7 219 53.0
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 1.1e-53 214.2 237 55.3
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 1.8e-53 213.4 220 55.0
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 1.8e-53 213.4 220 55.0
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 5.2e-53 211.8 219 53.0
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 2.0e-52 209.9 220 55.0
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-51 207.2 220 54.5
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.4e-50 203.8 227 55.5
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 3.0e-48 196.1 190 55.3
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 5.6e-47 191.8 219 53.4
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 5.6e-47 191.8 219 53.4
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 5.6e-47 191.8 219 53.4
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 6.2e-46 188.3 229 52.8
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 6.2e-46 188.3 229 52.8
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 6.2e-46 188.3 219 53.4
CARHR065160 Cardamine hirsuta HOM05D007344 ORTHO05D009010 6.2e-46 188.3 213 50.2
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 2.3e-45 186.4 218 52.3
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 2.3e-45 186.4 218 52.3
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-44 183.3 177 58.2
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 4.4e-44 182.2 226 51.8
BolC6t39694H Brassica oleracea HOM05D007344 ORTHO05D009010 7.1e-42 174.9 234 50.4
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 3.0e-40 169.5 217 49.3
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 5.1e-40 168.7 165 55.8
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 6.6e-40 168.3 214 48.1
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 6.6e-40 168.3 214 48.1
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 6.6e-40 168.3 214 48.1
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-38 164.1 214 47.7
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 1.2e-38 164.1 214 47.7
C06p46470 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-37 160.6 224 49.1
BcaC08g46684 Brassica carinata HOM05D007344 ORTHO05D032659 2.2e-35 153.3 212 50.0
C06p46640 Brassica napus HOM05D007344 ORTHO05D032659 2.2e-35 153.3 212 50.0
BolC6t39709H Brassica oleracea HOM05D007344 ORTHO05D032659 2.2e-35 153.3 212 50.0
A07p38390 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-34 150.6 223 47.1
BcaC08g46675 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-32 143.3 89 79.8
C06p46510 Brassica napus HOM05D007344 ORTHO05D009010 2.3e-32 143.3 89 79.8
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-30 137.5 97 72.2
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 2.8e-30 136.3 227 42.3
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 3.6e-30 136.0 232 42.2
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 1.4e-29 134.0 227 41.4
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 2.4e-29 133.3 227 41.9
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 3.4e-28 129.4 236 40.7
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 5.8e-28 128.6 227 41.0
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 6.4e-27 125.2 232 42.2
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.9e-26 123.6 224 39.3
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 9.3e-26 121.3 228 38.2
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 9.3e-26 121.3 228 38.2
BcaC08g46680 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-25 120.6 78 78.2
C02p29790 Brassica napus HOM05D007344 ORTHO05D009010 4.6e-25 119.0 129 55.0
BcaC03g15367 Brassica carinata HOM05D007344 ORTHO05D009010 1.0e-24 117.9 129 55.0
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-24 117.5 228 36.8
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-24 117.5 228 36.8
C06p46560 Brassica napus HOM05D007344 ORTHO05D041415 2.3e-24 116.7 64 90.6
BolC6t39701H Brassica oleracea HOM05D007344 ORTHO05D041415 2.3e-24 116.7 64 90.6
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 6.7e-24 115.2 220 36.8
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 8.7e-24 114.8 235 37.4
BolC6t39703H Brassica oleracea HOM05D007344 ORTHO05D032082 8.1e-22 108.2 154 43.5
BcaC08g46681 Brassica carinata HOM05D007344 ORTHO05D032082 3.1e-21 106.3 141 46.1
C06p46580 Brassica napus HOM05D007344 ORTHO05D032082 3.1e-21 106.3 141 46.1
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 9.0e-21 104.8 204 39.2
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 2.6e-20 103.2 166 42.2
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.7e-19 100.5 204 39.7
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 3.8e-19 99.4 232 34.5
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 8.4e-19 98.2 126 46.0
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.4e-18 96.7 230 36.5
C06p46620 Brassica napus HOM05D007344 ORTHO05D009010 4.2e-18 95.9 156 40.4
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 2.8e-14 83.2 210 33.3
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 8.1e-14 81.6 211 32.2
BolC6t39791H Brassica oleracea HOM05D000535 ORTHO05D009010 2.4e-13 80.1 211 32.2
Medtr6g059760 Medicago truncatula HOM05D000535 ORTHO05D000427 1.9e-10 70.5 167 37.1
Lj2g0028248 Lotus japonicus HOM05D000535 ORTHO05D000427 6.0e-09 65.5 115 37.4
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 6.0e-09 65.5 221 28.1
Psat0s2953g0120 Pisum sativum HOM05D000535 ORTHO05D000427 3.0e-08 63.2 158 33.5
Lalb_Chr01g0008701 Lupinus albus HOM05D000535 ORTHO05D000427 1.5e-07 60.8 138 35.5
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 7.4e-07 58.5 142 34.5
MSTRG.11530 Avicennia marina HOM05D000535 ORTHO05D000427 9.6e-07 58.2 141 36.9
Aa31LG4G14740 Aethionema arabicum HOM05D000535 ORTHO05D000427 1.3e-06 57.8 208 27.9
CANSAT56G4213 Cannabis sativa HOM05D000535 ORTHO05D000427 1.3e-06 57.8 141 31.9
Lalb_Chr22g0354021 Lupinus albus HOM05D000535 ORTHO05D013302 1.6e-06 57.4 218 25.7
Oeu032705.1 Olea europaea HOM05D000535 ORTHO05D000427 1.6e-06 57.4 158 31.0
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 2.1e-06 57.0 157 31.2
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 2.8e-06 56.6 160 30.6
Medtr6g059680 Medicago truncatula HOM05D000535 ORTHO05D000427 2.8e-06 56.6 158 31.0
CANSAT56G4212 Cannabis sativa HOM05D000535 ORTHO05D000427 3.7e-06 56.2 144 27.8
ClCG02G016000 Citrullus lanatus HOM05D000535 ORTHO05D000427 4.8e-06 55.8 131 32.1
TPR.G8847 Trifolium pratense HOM05D000535 ORTHO05D000427 6.3e-06 55.5 137 34.3
Ca_25239_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 8.2e-06 55.1 158 32.9
Psat1g112520 Pisum sativum HOM05D000535 ORTHO05D000427 8.2e-06 55.1 142 32.4


User provided reference genes

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