Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 0.0e+00 1104.4 553 100.0
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 9.8e-311 1069.3 563 96.4
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 7.0e-309 1063.1 563 95.9
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 7.3e-306 1053.1 563 94.8
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 4.4e-303 1043.9 563 94.3
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 8.1e-297 1023.1 576 91.5
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 2.1e-273 945.3 607 83.5
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 3.1e-264 914.8 604 81.5
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.8e-257 891.7 589 81.7
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.8e-257 891.7 589 81.7
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.8e-257 891.7 589 81.7
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 4.2e-253 877.9 579 81.3
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 4.2e-253 877.9 579 81.3
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 1.5e-250 869.4 587 80.2
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 7.4e-250 867.1 585 79.8
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 5.3e-248 860.9 597 78.4
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 3.2e-245 851.7 568 81.0
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 6.3e-241 837.4 594 76.4
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.6e-220 769.6 609 70.1
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.8e-214 748.4 594 67.3
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 2.4e-208 729.2 524 73.5
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.6e-207 726.5 526 70.9
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 4.5e-207 724.9 609 64.2
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 6.0e-199 698.0 575 65.0
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.3e-198 696.0 574 65.5
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 3.9e-198 695.3 495 72.1
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 8.6e-198 694.1 501 71.1
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.1e-197 693.7 505 71.7
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 4.3e-197 691.8 537 68.5
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.8e-196 689.1 505 70.5
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.1e-195 687.2 552 65.8
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.1e-195 685.6 603 62.4
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 5.2e-195 684.9 580 63.8
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 6.8e-195 684.5 541 66.9
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 3.7e-193 678.7 563 65.4
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 2.4e-192 676.0 490 71.0
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.6e-191 673.3 558 65.4
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 2.7e-191 672.5 561 63.6
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 4.6e-191 671.8 567 64.9
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 6.0e-191 671.4 589 61.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 6.0e-191 671.4 556 64.4
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 7.8e-191 671.0 527 66.0
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 7.8e-191 671.0 603 61.7
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.0e-190 670.6 553 64.4
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.3e-190 669.5 599 61.9
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.0e-190 669.1 540 65.7
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.9e-189 666.4 488 71.5
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 9.5e-189 664.1 530 66.8
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.1e-188 662.9 519 67.4
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 4.7e-188 661.8 541 64.1
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 4.0e-187 658.7 520 68.1
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.2e-186 657.1 569 63.6
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 2.0e-186 656.4 447 74.5
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 7.6e-186 654.4 520 66.3
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.3e-185 653.7 482 69.5
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.7e-185 653.3 553 64.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.2e-185 652.9 554 63.2
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 2.2e-185 652.9 571 62.3
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 2.9e-185 652.5 591 60.2
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 2.9e-185 652.5 565 61.2
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.7e-185 652.1 417 76.5
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 3.7e-185 652.1 573 61.6
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 4.9e-185 651.7 597 60.5
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 4.9e-185 651.7 503 67.4
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 6.4e-185 651.4 534 66.3
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.9e-184 649.8 439 73.6
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 2.7e-183 646.0 414 77.5
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.3e-182 643.7 424 75.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 5.1e-182 641.7 527 64.9
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.6e-182 641.3 512 67.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 6.6e-182 641.3 569 62.4
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 8.6e-182 641.0 540 64.1
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.5e-181 640.2 523 64.8
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.9e-181 639.8 582 61.5
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.9e-181 639.8 557 62.8
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.5e-181 639.4 600 60.7
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.3e-181 639.0 566 62.0
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 3.3e-181 639.0 551 62.6
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 3.3e-181 639.0 490 66.5
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 7.3e-181 637.9 426 74.2
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 6.2e-180 634.8 598 59.9
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 8.1e-180 634.4 435 72.4
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.1e-180 634.4 566 61.8
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.1e-179 634.0 569 62.9
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 1.4e-179 633.6 495 67.1
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-179 633.3 582 61.0
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.8e-179 633.3 578 61.4
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 3.1e-179 632.5 566 61.7
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 5.2e-179 631.7 475 68.6
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 6.8e-179 631.3 448 71.4
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 8.9e-179 630.9 408 76.2
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.2e-178 630.6 563 60.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-178 630.6 569 60.5
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 3.4e-178 629.0 479 67.0
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 4.4e-178 628.6 499 65.9
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 4.4e-178 628.6 561 62.4
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 5.8e-178 628.2 413 74.8
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 5.8e-178 628.2 565 61.6
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.3e-177 627.1 407 76.7
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.7e-177 626.7 523 62.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.2e-177 626.3 523 62.0
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.2e-177 626.3 568 60.2
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.8e-177 625.5 461 69.8
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 3.8e-177 625.5 588 60.0
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 8.4e-177 624.4 589 59.9
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.9e-176 623.2 433 73.2
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.9e-176 623.2 406 76.4
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.9e-176 623.2 406 76.4
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.9e-176 623.2 588 59.9
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.1e-176 621.3 583 60.4
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 9.3e-176 620.9 498 65.1
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 2.1e-175 619.8 517 63.6
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.7e-175 619.4 521 63.3
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 4.6e-175 618.6 458 68.6
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 6.0e-175 618.2 550 62.4
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 7.8e-175 617.8 458 68.6
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.9e-174 615.5 405 75.1
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 5.1e-174 615.1 408 74.8
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.5e-173 613.6 591 58.9
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.5e-173 613.6 559 60.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 8.1e-172 607.8 474 67.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 1.4e-171 607.1 572 58.4
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.8e-171 606.7 466 66.1
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 4.0e-171 605.5 542 60.3
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 9.0e-171 604.4 572 57.9
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 3.8e-169 599.0 416 70.9
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.4e-168 597.0 493 63.7
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 1.0e-166 590.9 459 66.0
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.1e-165 587.4 414 70.3
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.1e-165 587.4 369 78.6
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.8e-164 582.8 544 57.4
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 2.4e-163 579.7 573 56.0
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.7e-159 566.2 362 76.8
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.4e-154 549.3 454 62.8
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 5.5e-152 542.0 420 67.9
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.0e-146 523.5 447 61.1
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.4e-144 517.3 578 54.5
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.2e-143 514.2 413 63.9
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.3e-142 510.8 422 62.1
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 2.5e-141 506.5 355 69.9
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.8e-131 473.8 364 65.4
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.0e-126 458.0 299 73.2
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.1e-125 454.5 373 63.8
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 2.3e-110 403.7 209 92.3
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 3.2e-104 383.3 197 92.9
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 6.8e-94 349.0 376 50.3
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 2.6e-93 347.1 180 91.7
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.3e-81 307.4 362 51.9
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.6e-74 283.1 159 81.1
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 7.8e-74 282.3 156 82.7
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 7.8e-74 282.3 156 82.7
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 1.2e-71 275.0 246 60.2
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.6e-66 258.1 180 72.2
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.5e-64 250.8 199 62.8
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 3.3e-64 250.4 357 38.7
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.8e-54 218.0 148 77.7
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.5e-53 214.9 357 35.3
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 4.6e-50 203.4 128 79.7
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 4.6e-50 203.4 109 90.8
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.3e-48 197.2 210 55.7
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.1e-47 194.5 309 36.6
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.6e-42 176.8 127 73.2
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 3.4e-37 160.6 95 84.2
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.9e-36 157.5 110 69.1
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 8.4e-36 156.0 83 86.7
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.6e-34 151.8 164 54.9
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.0e-33 149.1 83 81.9
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.5e-32 144.4 210 39.5
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.7e-32 143.3 88 75.0
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 3.3e-24 117.5 101 63.4
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 6.9e-22 109.8 119 50.4
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 2.2e-12 78.2 182 31.9
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 5.0e-12 77.0 47 76.6
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 6.1e-10 70.1 111 40.5
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 2.0e-08 65.1 221 33.0
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 4.8e-07 60.5 32 81.2
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 1.1e-06 59.3 57 54.4


User provided reference genes

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