Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.9e-192 675.6 338 100.0
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.1e-191 672.2 338 99.4
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 6.2e-191 670.6 338 99.1
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.0e-180 636.7 344 93.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.3e-180 636.3 344 93.9
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.2e-172 609.0 347 88.8
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.8e-159 564.7 338 84.9
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.4e-157 558.5 338 83.1
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.4e-157 558.5 338 83.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.6e-154 549.7 346 80.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.7e-154 548.9 344 80.5
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 3.0e-153 545.4 331 83.1
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.2e-148 529.3 346 77.7
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.8e-143 512.3 344 74.1
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 9.1e-134 480.7 333 70.9
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 9.1e-134 480.7 333 70.6
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.9e-132 475.7 332 71.4
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.8e-132 475.3 325 72.0
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 6.5e-132 474.6 323 71.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.5e-131 471.5 323 71.8
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 9.5e-131 470.7 334 68.6
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.6e-130 468.8 326 71.2
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 4.7e-130 468.4 336 67.9
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 4.7e-130 468.4 336 69.3
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.4e-129 466.8 328 71.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.8e-129 466.5 334 68.3
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.0e-129 465.7 272 84.6
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 8.8e-129 464.2 336 68.8
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.2e-128 463.8 328 68.9
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.3e-127 460.3 323 70.0
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.7e-127 459.9 335 69.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 6.3e-127 458.0 333 68.8
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.4e-126 456.8 326 68.7
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 2.4e-126 456.1 326 68.1
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.0e-126 454.5 326 67.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 9.2e-126 454.1 328 68.3
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.7e-125 452.6 328 68.9
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.7e-124 449.9 336 66.7
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.3e-124 449.5 335 67.5
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.3e-124 449.5 348 66.7
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.8e-124 448.7 319 67.7
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 6.6e-124 448.0 324 69.1
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 8.6e-124 447.6 328 69.2
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 2.5e-123 446.0 359 63.5
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.5e-123 446.0 328 67.1
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.2e-122 443.7 328 67.4
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.2e-122 443.7 334 66.2
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.6e-122 443.4 388 60.8
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 2.8e-122 442.6 330 68.2
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 6.1e-122 441.4 336 66.7
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.1e-122 441.4 381 60.6
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 8.0e-122 441.0 331 66.8
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.0e-121 440.7 331 65.0
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.4e-121 440.3 319 67.7
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.2e-121 438.3 315 67.9
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 6.8e-121 438.0 315 67.6
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.6e-120 436.0 331 67.4
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.6e-120 436.0 328 64.6
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.4e-120 435.6 328 65.2
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 5.7e-120 434.9 308 70.1
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 5.7e-120 434.9 298 71.5
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 9.8e-120 434.1 340 65.9
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.9e-119 432.6 319 68.0
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 3.7e-119 432.2 334 66.2
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 8.3e-119 431.0 363 62.5
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 8.3e-119 431.0 328 65.2
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.4e-118 430.3 331 65.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 7.0e-118 427.9 315 67.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.5e-117 425.6 328 65.9
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.6e-117 425.2 332 65.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 7.8e-117 424.5 330 65.2
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.7e-116 423.3 342 63.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.7e-116 423.3 342 63.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.9e-115 419.9 326 64.4
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.9e-115 419.9 328 64.9
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.3e-115 418.7 314 65.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 4.7e-114 415.2 293 69.6
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.0e-113 414.1 328 64.0
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 4.0e-113 412.1 313 66.5
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.7e-111 406.8 319 63.3
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.2e-111 406.4 318 65.4
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 8.3e-111 404.4 299 66.2
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.1e-110 404.1 316 62.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.2e-110 402.5 319 63.6
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.6e-109 400.2 306 66.7
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.7e-108 396.7 322 60.9
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 5.6e-107 391.7 365 58.1
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.2e-106 388.3 280 69.6
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.8e-105 386.7 274 69.0
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.3e-105 386.3 325 60.3
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.2e-102 375.9 270 70.4
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.4e-102 375.2 271 66.4
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 5.4e-102 375.2 303 62.0
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 7.3e-99 364.8 332 56.6
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 4.7e-98 362.1 327 57.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.3e-97 359.8 253 68.0
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 2.3e-97 359.8 212 79.7
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 4.0e-97 359.0 324 58.3
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 5.2e-97 358.6 323 56.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 4.9e-95 352.1 249 70.7
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.7e-93 346.3 290 59.7
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.7e-93 346.3 313 57.8
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.7e-93 346.3 320 56.2
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.3e-92 343.2 400 48.2
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.3e-91 339.0 331 54.4
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 7.3e-91 338.2 314 56.1
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.2e-90 337.4 322 54.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.2e-90 335.1 325 56.3
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 8.1e-90 334.7 325 56.0
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-89 334.3 314 56.4
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 6.9e-89 331.6 326 54.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.4e-88 329.3 311 54.0
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 4.4e-88 328.9 324 56.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.9e-88 327.8 316 55.7
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-86 323.9 248 64.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 7.1e-86 321.6 352 53.4
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.5e-83 313.9 261 59.4
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.3e-83 312.4 287 58.2
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 9.9e-80 301.2 339 51.9
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.2e-79 300.1 312 51.3
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.2e-79 300.1 388 45.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 6.7e-76 288.5 276 56.2
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 8.1e-74 281.6 278 52.5
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.3e-68 264.2 304 47.4
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.3e-67 259.6 312 45.2
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.5e-64 250.8 317 43.5
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-62 244.6 307 42.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.4e-62 244.2 316 42.7
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.0e-60 236.5 244 53.3
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.0e-56 223.8 153 68.6
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 6.5e-55 218.8 137 75.2
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 4.3e-51 206.1 257 43.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 6.9e-49 198.7 253 40.7
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 6.9e-49 198.7 166 61.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 9.1e-49 198.4 114 80.7
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 4.5e-48 196.1 204 46.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.2e-47 193.7 308 39.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-46 191.4 161 55.9
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.4e-46 191.0 326 38.7
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 3.8e-39 166.4 250 39.6
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.6e-37 161.0 234 41.5
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.1e-33 148.3 102 66.7
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 2.4e-33 147.1 274 33.2
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.0e-32 144.1 282 34.4
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.8e-26 123.6 393 28.2
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.3e-26 122.5 248 33.1
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-25 121.7 232 32.3
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.4e-25 120.6 87 72.4
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.4e-25 120.6 328 31.7
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 3.5e-24 116.7 124 42.7
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 3.5e-24 116.7 116 43.1
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-23 114.0 73 74.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-23 114.0 73 74.0
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 5.0e-23 112.8 73 72.6
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.5e-22 109.4 153 37.3
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.5e-22 109.4 155 40.0
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.0e-21 105.5 86 61.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.3e-20 104.0 292 28.1
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 5.2e-20 102.8 250 30.4
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.7e-18 97.8 215 33.0
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 7.7e-16 89.0 60 68.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.4e-12 78.2 80 48.8


User provided reference genes

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