Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 3.0e-72 275.0 134 100.0
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 3.0e-72 275.0 134 100.0
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 1.1e-69 266.5 134 96.3
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 5.3e-69 264.2 134 94.8
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 2.6e-68 261.9 134 92.5
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 5.5e-58 227.6 139 82.0
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 6.3e-54 214.2 138 80.4
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 1.6e-52 209.5 134 76.1
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 8.5e-51 203.8 139 73.4
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 6.1e-49 197.6 135 74.1
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 3.0e-48 195.3 134 71.6
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 5.2e-48 194.5 135 71.1
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 3.6e-33 145.2 130 58.5
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 8.1e-25 117.5 105 56.2
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 1.2e-23 113.6 118 50.8
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 2.0e-23 112.8 123 50.4
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 2.0e-23 112.8 130 48.5
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 2.6e-23 112.5 126 51.6
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 3.4e-23 112.1 130 47.7
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 5.8e-23 111.3 100 53.0
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 9.8e-23 110.5 128 50.8
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 2.2e-22 109.4 146 46.6
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 2.9e-22 109.0 132 47.0
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 8.3e-22 107.5 129 49.6
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 1.1e-21 107.1 135 45.2
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 7.1e-21 104.4 135 46.7
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.7e-20 102.4 125 51.2
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 3.5e-20 102.1 129 45.7
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 3.5e-20 102.1 125 51.2
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 3.5e-20 102.1 125 51.2
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 3.5e-20 102.1 100 54.0
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 6.0e-20 101.3 124 43.5
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 6.0e-20 101.3 100 51.0
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 6.0e-20 101.3 121 44.6
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 1.0e-19 100.5 116 50.9
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 1.7e-19 99.8 121 44.6
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 2.3e-19 99.4 100 58.0
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 2.3e-19 99.4 100 58.0
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 2.3e-19 99.4 125 51.2
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 3.9e-19 98.6 122 48.4
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 5.1e-19 98.2 100 48.0
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 6.6e-19 97.8 124 44.4
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 8.6e-19 97.4 126 46.8
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.1e-18 97.1 100 49.0
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.1e-18 97.1 100 48.0
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.1e-18 97.1 137 45.3
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 1.5e-18 96.7 100 51.0
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 3.3e-18 95.5 100 48.0
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 4.3e-18 95.1 125 45.6
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 7.3e-18 94.4 129 42.6
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 7.3e-18 94.4 142 45.1
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 9.5e-18 94.0 142 45.1
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.2e-17 93.6 125 48.8
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 1.2e-17 93.6 101 51.5
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.6e-17 93.2 101 49.5
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 1.6e-17 93.2 126 45.2
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.1e-17 92.8 101 49.5
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 3.6e-17 92.0 123 47.2
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 3.6e-17 92.0 129 44.2
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 1.4e-16 90.1 125 44.8
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 1.5e-15 86.7 104 49.0
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.0e-15 86.3 140 42.1
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 2.0e-15 86.3 130 42.3
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 3.4e-15 85.5 121 44.6
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 4.4e-15 85.1 102 48.0
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 7.6e-15 84.3 119 45.4
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 1.3e-14 83.6 98 49.0
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 2.2e-14 82.8 137 37.2
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 8.4e-14 80.9 127 41.7
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 7.1e-13 77.8 105 45.7
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 3.5e-12 75.5 102 45.1
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 5.1e-11 71.6 69 55.1
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 8.6e-11 70.9 118 34.7
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 4.7e-09 65.1 114 43.9
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 5.2e-08 61.6 85 43.5
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.7e-06 56.6 57 47.4
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 2.2e-06 56.2 113 38.9
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.9e-06 55.8 41 63.4
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 6.4e-06 54.7 56 48.2
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 8.4e-06 54.3 75 37.3
PSO017G4670 Papaver somniferum HOM05D002803 ORTHO05D003089 8.4e-06 54.3 40 62.5
PSO478G0765 Papaver somniferum HOM05D002803 ORTHO05D003089 8.4e-06 54.3 40 62.5
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 8.4e-06 54.3 67 40.3


User provided reference genes

Program Settings